Array 1 187875-187041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRT010000004.1 Dialister invisus strain SL.1.06 PMHNNIIG_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 187874 25 100.0 46 ......................... TACAAATCATCTGTGGCGATTGCCCACAAATCCGCAATAAAAAAAG 187803 25 100.0 51 ......................... CCGGCTTGCCTTTCTTTTAGCTTCCGTCAAATCCTTTGCGGATAAAAAAAG 187727 25 100.0 43 ......................... CCGTCACACTTGAGTGAACACTCACCATCTCCAATAAAAAAAG 187659 25 100.0 48 ......................... TTATAGACCGAGTTCTCGCGCCTTCCGGTAGCGTTCTTATAAAAAAAG 187586 25 100.0 49 ......................... CTGTACCACGGTGTGGCGTATTCTTTTATTTCCACGATGATAAAAAAAG 187512 25 100.0 52 ......................... CGAGCACTGCGTAACGACCATCGCCCAATGCGACGGCTTTCAATAAAAAAAG 187435 25 96.0 46 G........................ GCACTTATTCCGTCACTGTCCGTAACTTTCATGCATATAAAAAAAG 187364 25 100.0 52 ......................... CCGCCATTACCATTGAACATAAGAGCAGCGGCGGAAATCAATATAAAAAAAG 187287 25 100.0 48 ......................... ACGATTACATTAATCACGATTGCGATTAGCCACTGCCAATAAAAAAAG 187214 25 100.0 50 ......................... CCGGATTATCTCGGTAAGTTTTGATGATGTCTTTCAGCATATAAAAAAAG 187139 25 96.0 49 ...........A............. GCCAGATCATTAGGATTATTCGTTTCATACTTGCGGACAATAAAAAAAG 187065 25 88.0 0 ......T..........G......A | ========== ====== ====== ====== ========================= ==================================================== ================== 12 25 98.3 49 AATCCCCGAATGAGGGGACGGAAAC # Left flank : GAAGAAATAGAAATCAGAGTGCGGCCGACAGACGATAATCGGTATATTGTTCTCATCATTTATGACATCACGGATAATAAAAGGAGATTATCTATGGTACGCTGTCTGGAGCAGTTTGCTGTGCGCGTGCAAAAATCCGCATTTGAAGGATTTCTGACACCTAAACAATACGAATGTATATCGGAACTGGCGAGCAGAATCATAAATGCGGAGCAAGATTCATTGCGTATTTATATTCTCTATGACCATACAAGAGTAAGATCGTGGGGCATAGGTGATATAAAAGAAGACGATGTGATAATATATTGATTAAGAGGAATTGGAGACGGTACAATATGGATGAAAAAAGATTTAATCCGCGCCGATGCCGATGGGTACGGAGAGAAATGTATGGATTGCGTCAGAGGGAAGCCTTTTTGTGCAAGGAGATGGAGGATCCGCCGAAAGATAGCAAAAATGTTCAGACTTGGCGGCATATCATAACGACAGGATAAAAAAAG # Right flank : AACGATGATGGAGTAACTTCAATGTTTCAGTATGCAGATCACATTTGACTATTGCATTTCTTTTTACTTACAATAATAAGAAAGGAAGAGAGTGGTAAATAGAGAGGCGCTATGGGAAATACAGCTTTCGGACGGATGGGTGAGGATCGGGCTTGTTTGTACCTGGAGGAGAAGGGGATGACTTTGGTCACCCGGAATTTCAGGTGTAAACATGGGGAAATCGATCTCATCATGAAGGACGGAAGCGTTTTTGTATTTGTCGAGGTGAAGACCCGGCGGAGCCGTTTGTATGGGGAGCCGATTGAAGCGGTGACTGTGTATAAGCAGCGGCATATCCGTTATACGGCGGAGGTATTTCTTTTAGCGCGTCATTTGCGTGATATCCGGATCCGTTTTGATGTGGTGGAAGTCATGATGGCGCCGTGGCGTGCGGTGCGGTTGCGTCATACGAGGAATGCGTTCTGAGAGAGGGAGATGCTATGTTTGCGCAGGTGTTTGGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGAATGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 199759-197449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRT010000004.1 Dialister invisus strain SL.1.06 PMHNNIIG_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 199758 28 100.0 32 ............................ ATATCAATTGGTTTATCTTAAGTCCATTTCTT 199698 28 100.0 32 ............................ GAAAACTGCTTTTTCCGGTAAAAATCTTATAA 199638 28 100.0 32 ............................ TCCTATACTTATCTACTCTGGCTTTCAAGCTA 199578 28 100.0 32 ............................ ACCCTCTTCGGTCATTGAGCCTTGTAAAGCAA 199518 28 100.0 32 ............................ TGCAAAATTCAAATCTTCTTCAAAAAATGCTT 199458 28 100.0 32 ............................ CGGATAAACCCATAGAGGGGTGAAACGGTTTT 199398 28 100.0 32 ............................ CCAAAAAAAGGTTCTCTGTCAAAAAGAAAGGA 199338 28 100.0 32 ............................ TTTTGTGTGTGCAAGCGGCGTTTTAAAGTAAA 199278 28 100.0 32 ............................ AATTAGAAATGTATCAGGAATGCCTTATACAG 199218 28 100.0 32 ............................ ACCCCGCGGGCGATTACGTCCAATTGGAGCGG 199158 28 100.0 32 ............................ TTTTGCAAAACGCGGCATGCGCCCCGAATTAA 199098 28 100.0 32 ............................ TTTGGCGTCGCTTGTCGTATACGTCAGCGCTC 199038 28 100.0 32 ............................ TCCACCGAGCAGGCTGCCACCAAATATAGATT 198978 28 100.0 32 ............................ ACAGAATACAAGCCCGCAGCGGCAATTGACTT 198918 28 100.0 32 ............................ ACCGGAAGTATCGGTGCGTTCTTTCCGGAGCC 198858 28 100.0 32 ............................ TTCTACCGACTTCAAGTTATCGATAGTAGCTA 198798 28 100.0 32 ............................ TTAATTCACTATGGTGGATATTTAGAAATCAT 198738 28 100.0 32 ............................ ACTGCTTATTGATAGTAATTTCTTGGTGCTCG 198678 28 100.0 32 ............................ TCTCTCATAAAAAATTATTGTATCTCGGACTG 198618 28 100.0 32 ............................ AATTTATCTGCAGTATCAAGCAAATCTTGTAA 198558 28 100.0 32 ............................ ATGTACGCCAAACCATTATACTGAAGTGATTT 198498 28 100.0 32 ............................ ATACGGATCTTCGAGATGGCGGAACTGTTATT 198438 28 100.0 32 ............................ TGCACGTTTCAGAACATTGAAAGAAAAGGATT 198378 28 100.0 32 ............................ ATAGGTGGCTCCGTATGCATTTCTGATGATGC 198318 28 100.0 32 ............................ CTGGTTACAAGCCAGATGTGCCCCGACTTGCG 198258 28 100.0 32 ............................ TTTTGCTGCAATCCACAGCTCCAGTCCGTCAG 198198 28 100.0 32 ............................ GCAAGGATTACAAGTTTTTGATGAGAATGGGG 198138 28 100.0 32 ............................ AAAATACGGCTACGCAGGACTGAAACGCCAAG 198078 28 100.0 32 ............................ AGCAAAACCTATTGATTTGCATATAGTTTCAG 198018 28 100.0 33 ............................ ATAGATGCTGATGTACATGTAGAAAATGAATTA 197957 28 100.0 32 ............................ AATTCTTTTCATCAGCAATTCCATTACTTCTT 197897 28 100.0 32 ............................ GCTGGAAGTACGGACGGATGATGAAGGATATG 197837 28 100.0 32 ............................ CGGAAGATCTTAACGGATTAGCTTGGGAAAGT 197777 28 100.0 32 ............................ ATTTGAGTTAGACGAAAATAGCACCAGAAAAT 197717 28 100.0 33 ............................ CGCCGAAAAAGCGGCATTTCAGAGCTATTGCGA 197656 28 100.0 32 ............................ TTAGAGCTTTTCCACGCCTGCTGGCTTCCTTT 197596 28 100.0 32 ............................ TATAGGTATATGTAAGACGTTATAATAGGTAT 197536 28 100.0 32 ............................ AGTAGAATACAAAGCGGATTCTATTGATGGAT 197476 28 92.9 0 ....................C..G.... | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.8 32 GTTAACTGCCGCATAGGTAGTTTAGAAA # Left flank : ACTCAACCTGTCCAAAGTACTGGGACGCCTCCTTGATTATGTGCACTGTACAAGCATAAGGAAAGTGCCGGAAAGAAAAGTACAGGAAAGAAAAACTTATGCCATATATAGCAGGTACCAGCCTGAGGGCTCAATCCGGGTAAAAGCGAAACGCTATGCAAAAAGACATCCGGGAGTAACGATTGAAGAGGCTGCCCGGCTTCTGCAAGGAAAGAGAAAATCTGTCAGATTGCCGTACATACAGATGAAAAGCCTTTCCCGCGGAGGAACATTTAGCCTTTTTATAAAAAAGCGGGTAGAAGAAGAATCTGCCTTGACAGAATGCGGAACCTATGGTTTAAGTAATAACAGAACTGTTCCGGAATTTTAACCCAAATTTTTATGGCGTTTGAAAAATGCGATTAAATCAATATATTTCAAAGCAGGAATAAATTTGGGTCAAAGTGGGAGAAAGATGTATAAGCGTACGTGCTGTCGGATTCTTTTTCCGCTCCCGCATC # Right flank : GGTTCGATCTTGTTTAACAGGTTTATCATTTTAGAGAGGAGTTTTCATAAATCATTAACTTGTTTTGATATTTTAAGTATAATTAAATATAGTGTAAAGATAAGATTTTATTATGCGATGGAGAGGATAAGGAAAAATGAGTGAGAAAATTTCTTTAGCCTTAAAGGCGGGACTGCTGCATGATGTAGGGAAGGTATGCATACGTGCTACTCATGAGAGACAGAGACATTCTATTCTTGGGGCGGAGTTTATTAGATCCTTTTTGGCTGATACGGAAGCGGACAAGCAGCTGTTGCGCTGTATAAAATATCATCATGGAAGGGAATTGTCCGGCGCCGGATTGGATATTGATGATTTGGCATATGTTATATATGAAGCGGATAATATTGCTGCCGGTGCAGACCGGCGGGAAGCGGAAGGAGATCTTAATGACAGGGGTGCGAAGTTTGATTCCGATTTGTGCCTGGAAAATATATTTAATGTCTTTTCGGGGGACGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCATAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGCATAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 213008-212200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRT010000004.1 Dialister invisus strain SL.1.06 PMHNNIIG_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 213007 28 100.0 32 ............................ GCTGCCGGCTAATGTTGTTGACCATATCATCC 212947 28 100.0 32 ............................ TTTTAAAAATAATGAAGTCCGTAAATCAGGCA 212887 28 100.0 32 ............................ GAAAACAAATCCGATTGCTGCACAAGCGACAG 212827 28 100.0 32 ............................ ATAATGTTAATTTTTGCATAGCTTTTGCGAAT 212767 28 100.0 32 ............................ ACTATTTCTATCTTGGGCAGCCTATCAAGAAC 212707 28 100.0 32 ............................ CCGGTGCTGGTGCCAAAAGAACGTTACCGGTC 212647 28 100.0 32 ............................ ATTCAGAGAACACCTGTTCCCCGCCAATTTCA 212587 28 100.0 32 ............................ TACAAGGTTGACGATGTCTATTATCTTGTAGA 212527 28 100.0 32 ............................ AAGATCGGCAAGGCTATTGCCGACGCTTACGG 212467 28 100.0 32 ............................ ATACTGTTTGTAGCCGCTTCTTCTATGTTTGA 212407 28 100.0 32 ............................ TTCTTCTGAAATTGAAAAATCTTTTATGATTA 212347 28 92.9 32 .................T..T....... TCAGTATCCGGGTATGCCGGAGTCGTGACAAT 212287 28 100.0 32 ............................ TATTAACTCAACCGACTTTATGGAGTTGTTTC 212227 28 85.7 0 .................T..G...T.T. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.5 32 GTTATCTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGTAGGATAAAGGTATCCGGAAGAATCCGTGAGAGATGTCATCCGAGTCATAGATTCTTCACTCCGTGTCATATTTCCGCTTTCCTGCTTTCTTACAAAGCATTCTTGTCTCCATTCAGAATGACGATTGAAGGAGAGAGTGTCATGATGAGGGGAACGATAAGGCGTCATAATGAGGGAAATGTTAATCGTCATCCTGAACGAATGTGAAGGATCTGCTGCCGTGATGAGGAAATCGGTAAAATGTCATTCAGAGCAGGAGCGAAGGAGGCTTTCTGATTACCTTTTGCTTCATAAGGTATTTATTGCGAACCGGTTTTATAAAAGGTATGACGGAGGATAGAGGAAAGTATTGAATACTAAATTTTAACTCAAATTTTTATGGACACTGGGGAATGCGATAAAATCTATATGTTTGCAAAAGAAGATAAATTTGGGATAAAATAAAGAAAAAAGGATATGGTCAGACAGTATCGCAATATTTTTTTTGTTTTTTACA # Right flank : TTTCATAGTTCTTTTTTTATGGCTGACGTCTGATGGGGGTCGGCTTTTTATGTTGCGCGGCTGATGTTGCAGGGCGTATGTGGCGAAGTGGAGGGGGCTTTTTTGTCAGGGGCCGTTTTTCCTGTGCTATAATTTAGGCATACTTATGTAAAAGAGGTTTATCATATGGATATATATGGACAGTACAAGGATTCTTTAGAGGCGGTCATGCGGATGATGGCAGCTTCCATGGAGCGGTATGCGAAGGCACATAAGGATGATTCGGGGGAGTTGATTTATGAGCATCTGCGTTACCGGCTGAAATCGGAGAAGAGCATGCAGGCGAAGCTGGAGGCGCGGGGATTGCCGCTTACCCCTTGTTCGGCGCTCTGCGAGGTGCGGGATGCCATCGGGTTCCGTGTTGTTTGCCGCTTTATCGACGATATTTACAAAAATATTTCACGAATTAAAGACTTGCCGGGAATCACCGTGGTGAAAGAAAAGGATTATATATTGGATGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //