Array 1 193155-192467 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUP01000002.1 Pseudomonas kirkiae strain P17C NODE_2_length_280899_cov_41.175010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 193154 28 100.0 32 ............................ CGCCCGAGGGCTGTGGCAGTTCGAGCGCGGCG 193094 28 100.0 32 ............................ AGTATGGCCGAAAACCAATGTCGCGATATCTT 193034 28 100.0 32 ............................ ATCCGCCCGGAGAACAGCACGTCAGTTGCCAT 192974 28 100.0 32 ............................ AGAGGACGTCGGCCGGGGCGTTCTCGTCATCT 192914 28 100.0 32 ............................ TACGCCTGCTGGTGCCTCGCAGCGCGTGGTAA 192854 28 100.0 32 ............................ TGCGGGCCTGACTTGAGGATTGGTTTGATCTT 192794 28 100.0 32 ............................ TATTTGAAGACGAAGAAGCCATTGAGTGCTTC 192734 28 100.0 32 ............................ ACACACGCCGCTCCTTGTCGTCATAGACCAGT 192674 28 100.0 32 ............................ AGCACCCTGACTGTCACCCCCACCCAGCTCCG 192614 28 100.0 32 ............................ TGTCACCTGGGTGGCGCAACTGGTGATTCTCA 192554 28 100.0 32 ............................ TCACCCATCACCCCAACCCCAGTGGACGTACC 192494 28 82.1 0 ..........A.....C.G..AA..... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.5 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGCGCTGGATCGCCTGCTGGCGCTGAACTGGCTCACGGGCATGCGCGACCACGTGCGCCTGGGCGAGTTGGCCCCGGTGCCGGCAGGGGTGCGTTATCGCCACGTCAGCCGTGTGCAGGTGGACAGCAACCCGGAGCGCGCCCGCCGACGCCTTGCCAAGCGTCACGACATCAGCGAGGAAGAAGCCCGCCAGCGCATCCCGGACAGCGCCGCCAAACGCTGCGACCTACCCTTCGTGATCCTTCGCAGCAATGGCAACGGGCAACCCTTTCGACTGTTTATCCGCCATGGCCCGTTAATCGACATCCCAACCCCCGGCCCCTTCGGCAGTTACGGCCTAAGCGCCACCAGCACCATCCCCTGGTTCTGACCCTTTTTTCAGGCAACGCTGGAGCCCTTGTAAAATCAAGCAGTTACAAGCGGCTTCAGAAAAAGGGTAAAGCCTGTGGAAAATGGCTTTTTCTCTTTGGAAACGGATAGTTATTGAGGAAACTGGCTA # Right flank : CTGATGATGGCTATACCGGCCACGGCGGGCCTTATTGCCGCTCCAGTGCCTCCAGCTCCCGGACAGCCTCTTCCAGCTTGCGAGTCCTTTTCTCGATCTTGCCGGGGTCGCCGCCCTGCTGGGCTTCACGCAGGTCGGCCTGGCGTTCCTGGACTTCGGCCTGCGCCGCCTCGTAGTCGGCCTGGCGCTCTTGCCGCAGGCCTTCTTCGGTACAGTGCTCGCGCACGGCGCGCAGGGCCTTTTCCAGGCCGTGGGTGCGGCCCTCGTTGCCGTGCGCCCTGGCTTCCTCTAGCTGGCCGAGGATCGCGCGCTCCTTGTCGGCACAGCTCTGCGGTGCGGCCTGTATGGCCGTGCAGAGCAGGAGGATGGGGGACAACAGCAGCGAACGGGGTAGCGATATCATTTCCGGAACCCTTCCTGTGAGTTTCCGGCAGCCTAACACTCGCGGTGGCCGCTGGGCCTCCGTAGAATTGCGCTCTTTTTCCCGGAGCCTGCCGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 95564-95236 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUP01000008.1 Pseudomonas kirkiae strain P17C NODE_8_length_140919_cov_40.067312, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 95563 28 100.0 32 ............................ TTACCAGTCAGCGTCGCTGCCAGTGGCGTGAT 95503 28 100.0 32 ............................ AAGCGCACTCCTTGGGCCGGAACAATGGCCAA 95443 28 100.0 32 ............................ AGGCCGTCGCTGTGCCGCCAGGCGACGTCCAG 95383 28 100.0 32 ............................ TGAAGGCGCGACGCTACATGCCGAAGCGGTAG 95323 28 89.3 32 .....T......A...A........... AGCCACCCTCGAAGTCCATGTTGCAGGCGTTG 95263 28 75.0 0 .C.........CAC.......CTG.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCGCCCCGCCCGTCGATGGCAAGGCCAACGCCCATCTGCTGGCATTCCTGGCCAAGGCCTTCGGCGTGGCGAAGAGCCAGGTGAGCCTGGAGTGCGGCGACTCGAACCGGCAGAAGCGCCTGCGCATCCACGCCCCACGACAGTTGCCGGACCTGCCGGGCCTGGTGCACCCGGAGAGCTGACCCACCGACCGGGCCATTCAAAGAGTGGCCTGTCATAGCCGTGCCATACATGCCGGGATTCCCGTATAGGCAGGCATCCCGGCAATACACTCACACCACTCACCTGTGCCCCCGCCTGCGCGGGGACGACGGATACTGCGCCCAGGCAAACATTTCTGCCCCCGGGTTCAGCCCGTACCCTGCCGCTGACCCTTTTTCCAGAGCCTGTATCAGGCCATTTAAAATCAATAACTTACAGACAGACCAGAAAAATGGGTAAACACAGTAAAACAAGGCATGGCGCTTTCCCAATCAAGCAGTTAGCGTAGCGATGCTCTA # Right flank : GCCGCGTCCTTTCCGTCCCGTGCTTGCTGCTGGGGGCATCGCTCTTTAGACTTGCGCCCTTCCTCCGATTCAATAGCAGGGTCGCAATGCCCACTGCCTTTCCCGAAGACTCCATCGGCCTGGTCCAACCCCAGGTATTGCACTTCAGCGAGCCGCTGGCGCTGGCCTGTGGCCGCAACCTGAACGAATACGATCTGATCGTCGAAACCTACGGCGAGCTGAACGCCGCGCGCAGCAATGCCGTACTGATCTGCCACGCCCTTTCCGGCCACCACCACGCCGCCGGCTACCATAACGCGGAAGACCGCAAGCCGGGCTGGTGGGACACCTGCATCGGCCCCGGCAAGGCCATCGACACCAACCGCTTCTTCGTCGTCAGCCTGAACAACCTCGGCGGCTGCAACGGCTCCACCGGCCCGAGCAGCGTCAACCCCGCCACTGGCAGGCCCTATGGCGCGGACTTCCCGGTGGTCACCGTGGAAGACTGGGTACACAGCCAG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //