Array 1 1471035-1470046 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKK01000002.1 Thermostaphylospora chromogena strain DSM 43794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1471034 37 100.0 34 ..................................... AACGACGCGGGCTTGTGCTCGGACTACGTGTGCG 1470963 37 100.0 36 ..................................... CGTCGCAGACGAGGGACACGTCATCGTATCCGTGGA 1470890 37 100.0 33 ..................................... ATTGCCCACCCGACCTGAGGCGTGTTCCGTCAA 1470820 37 100.0 37 ..................................... TCCTTGTCAGTAGGTGCGCTTGGTCGAGTCGAAGCCG 1470746 37 100.0 37 ..................................... GCAGGTTGCGTCACGCAACGCGCCCGCGACCTGCTCA 1470672 37 100.0 36 ..................................... TCTGAGCCGGTGATGGTGATGAGCACTGCCGACCCG 1470599 37 100.0 36 ..................................... GCCGAAAGCATGCGTGCTCCTTAGATGCAGTCACAG 1470526 37 100.0 38 ..................................... GGCGACTCCGTGTCCGAGGACATGTTGAGCCTGGCCAA 1470451 37 100.0 36 ..................................... ATCACCCGGCGGGTGAAGCAAGTGACCTGCTCGGAG 1470378 37 100.0 37 ..................................... TCCCCCCGCACGAGCACTATGTCGAGCCGTTCTGCGG 1470304 37 97.3 37 .....................A............... TCTCCGCCGTCATCCGTGTCCACTCCAGGCTCGCCGA 1470230 37 100.0 37 ..................................... TGTCACGCGCCACTCCCCGAATCCACAGGCATGGTCG 1470156 37 100.0 37 ..................................... AACTACGGGCAGCGGCACGCCCGCGAACTCCAGTCCG 1470082 37 91.9 0 ................................A.G.T | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 99.2 36 GTGGCAGCCGTCCTCCGGGGCGGCTGAGCATCGCAAC # Left flank : GCGCGTCTGCTGGCCCGACATCTACGTGGTGAACTGCCCACCTATGTTCCATGGACGGTCGCCTAATGCAGCTCTTGCTCACCTACGATGTCAGCACCATCGATCCGGAAGGACGGCGTCGCCTCAGGCAGATGGCCAAGCTGTGCGAGGGTTACGGACACCGTGTACAGAAGTCGGTGTTTGAGATCACTTGCACCGATGCCGAACTCCTTACGCTCTTGGACGGTGCCAATCGCATCATCGACCCAGGCGAAGACTCGGTACGTATCTATCGCCTCCCCGCAAACGGCTTCACGGCTCTATACCGCATTGGTAACGCCAAGCCCGTACCCCATCATGATCCACTCATCATGTGATGATCTTCTCTGCTTCGGAACCTGGAGTGCTCACGCGACACGCCAGGGGTTCCTAAGGAGATATCGCCACATATGTAACTTGATAAGTAAATCTGACCGGTACTGGTAACGGCATCGGGAAGGCATTACGCCTGCTCAAAGGCT # Right flank : GGTGCCGTTGTCGTGGAAGGCAGGAACGGCGTGGTCGGTGCCGACCGGTCGGCCGGAACGGAGCAGCGGGCTGACCGGTGACGCTCGTGCCCGTGCCGGGCGGACGGCCCGACCGGCGACAATGACATGGGCGACCACTCCCGCCATCTGAGCGTTTCCGCTGCTCGGCGACGGCTTGGGAGAAAAGTCGAAGGAAGTCGCCGTCGGATGTCGAAGACCCGCCGCCCGCTCCGACTGAAGGGTGACGGCGCGCCACGGGGGCGCGCGAGATAGGAGGGCACCCTAGATGAAGTACATCGCGATGATCTACGGCAACCAGGCCAAGTGGGACTCCTTCTCGCCCGAGGAGTGGTCGGAGGTGGTCGCCAAGCAGGCGGCGTTCAACGCCAAGTACCGGGAGACCGGCGAGCTCCTGGGCGCCTACGGCCTGGCCGACGCCGAAGCCGCCCAGCTGGTGCGCCGCAAGGACGGGGTCCCGGTGGTCACCGACGGGCCGTACC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCCGTCCTCCGGGGCGGCTGAGCATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.50,-16.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 1480315-1479476 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKK01000002.1 Thermostaphylospora chromogena strain DSM 43794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1480314 37 100.0 36 ..................................... CGCCGTGGCTAAAGGTGTAACTCGACGGCTCAGAAG 1480241 37 100.0 33 ..................................... GCACTCCTGGGGCGCGTTGGACACGATCACAAG 1480171 37 100.0 34 ..................................... GCACAGCACGGCCAGCACATCAGCGCCATCGGTA 1480100 37 100.0 37 ..................................... AACCCGAGCGCCGTCGCGACGGACGCCTGCACGCCGA 1480026 37 100.0 36 ..................................... ACCGACAGCAGGGAGTGACTCCTGCTTGGGGTCAAC 1479953 37 100.0 39 ..................................... CGCGCCTATTCCCGGCACCGTCCGCGCGGCCCGGGGATG 1479877 37 100.0 34 ..................................... CGGCGTATGGGCTGGTCACGTACCCTGCCGACGT 1479806 37 100.0 35 ..................................... CGTCATCAATGGCGACGTTGCCGTGGACCCGAATG 1479734 37 100.0 38 ..................................... GTCGCCGCCCTCCAGGTCTCACGGGACGGCACCGAACG 1479659 37 100.0 37 ..................................... GTCCGCGGCGGCCACGAGGCCCGCGGCTACGCCCGCG 1479585 37 100.0 36 ..................................... TTCCCCTGCCACTTACGGGTGACCTGGGTCTGGGAT 1479512 37 94.6 0 .................................T..G | ========== ====== ====== ====== ===================================== ======================================= ================== 12 37 99.5 36 GTGGCGGTCACCCTTCGGGGTGGCCGAGCATCGCAAC # Left flank : CGTAAAGGAAAGCGCACTGCGAGCAACTCCGAGGCCGACACCCACCATGATCGACAACACTGGTGGTCGAGCGCTGAAAGATCACGCAGTTAGTGTCGGAGCCGGTTTCGCATGTCGCTGGCAAGGGGCGATCCATGGTTGGAAGTCGAGCGATCGCGCTCTCTCGTGCGCCTGTCTCCGGTTCCCTCCCTGATCTCGCTCCTGCCTCCCAGGCCAGCTCAAGGCATGGTGTTTACCATGGTGATCGGGCGGTCCAACAAGCCGCTCGACAAGCTGAAGGAATCTCCGAGCGGGCAGTGCGAGTACGGTTGCCGCATAGTCTTGTTCGTTGATCATCGGCGGGGTCATTATCGAGAGTGCGCTGATCTGCTTAGGAACCTGGAGTGCTCACGCGACACGCCGGTCCTTCCTAAGGAGGTATCGGCTCGTTTGTTCCTTGATAGGTGAATTGCTGGCTCTTCATTTAACCCCTAAATCGGAGAAGTTCCTGTTCAGAGGCA # Right flank : GGCTCTTCCTTAGAGATTTACGTGATACACGGGATCCGGCACCCAGAAGCTGCCAAATAGCAACAATCTGCTCCAATTGGAGCGCCTATTAGGGCTTCGATGAACAGCTCTGGAGAAGGGACGAATTTTTGCGTTCTGATGGCGCGTCTCGCTGAGAGGAGCTAACTTCTCCCGGGAAGCGGATTAGCGATCGATTTATCACAGATAGTGAACGGCGGCTGCGAGACCTAGGTAGAGGGGAGGTGATGGAATGAGAAGAATGGGAGTATTAGAGGAGATAGTGAGGATGGTCCGGGCGACCCTGGAAAGCTCGGCCCGGACCATCCGTCTCTGCCTGCTGCTGGCAGTTGCAACGCCCCCGCTAGGGATCGTGGCGCTTACTGTCTACCTCATTGGCAGGTAGCTTTCCATCAAGCAGGATCAGGCAAGGGGCTATGGGGGCATCAGCGACTTGCTGATTTGAAGATCATCGAATCAGTGGATCGAAATGGCGGGTTTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCACCCTTCGGGGTGGCCGAGCATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 4587309-4587015 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKK01000002.1 Thermostaphylospora chromogena strain DSM 43794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4587308 30 100.0 34 .............................. ATCACGATGGAGCCGACAGGCGGCTCCTTAGGGA 4587244 30 100.0 34 .............................. CCTCTTGCAGGGTCCCGCACGCCGAGCACAGCTT 4587180 30 100.0 38 .............................. GCCAGGTCGAGCCCGGCATCCTCTAAGGGCTCGTACGG 4587112 30 96.7 38 ........................G..... CAGGTCAGAGGCCGGTTTTCCCGTTCCCGGTCCATGCG 4587044 30 86.7 0 .............T...A......G...C. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 96.7 36 GTTCCCGATCATCCCTGGAGGGATAGCAAC # Left flank : GAAAGTCCCCCCCATCACCGCATCATCGGTACGCCTGGGCGGTCACGGCGACTTCAGCCGCGCACCAAGTTAATCGCACCAGGAGTGCCACGCCTGCGAACATCCGAGCGAGATCTGCTGCCGGTGCAGGACTGCCCGGCTGTACTGGAAGACGATCCGAAGCCGGAGAGCAAGGGCTGTGCGATTTCTGTTGAATGTTCCGATGTGAATCTACTTGTGGAGATCGTCGTTCCGGAACAAGTGTTAGTTTCTCGAGACAGGATTATGTACGACAATTACTCTTCTGTGTGTGAGCTCGTACTTTGATGCAGGGCATAGGGATGACAACCTCGTGATCGTAGTGGTATTGCCATCCTCGACTTCCCAACGGAGGTTTCTGACTCTTGGGGGCTAAGTTGATCAATGTTCTGACCAGCGGCGATGCGCTACCGCCGGGTCGCTGCAAAACAGGGCTTCACTGGCTCCGTAGAAGTATGGCTGACCTGCGACTTTACCATCGG # Right flank : GCGGGACGGTGATGTACCATGGCGGGTTGCTGATCGCTTAGAGGAATAGCAACGTCACATCTTCAGCGGTCACATACGGCGCTTGGACTTGCCGTTGTCGACCACCCCTGGTTCTAGAGATAGCAACCAGCTTGGCCTGGGCCCTGGTGATGGCGTGGAAGGACAGAAACGCCTTCTGTCGTCCAGTGTGATGGGAACATCGTGGTTGTTGATCATTTTTGGGGACGTCATGTCGCGTTGACCTGTCTCATCCTCGCGTCCTCGATTGTTGCCCCTTTCAAGAGAATCCGAACATTCTTCATGATTGGTCTTTATGAGATATAAATGTGTATCCGGGGGATATGCTATCGAGTGTGAATATTTATATTGTTATATATCCAATCTTTATGGGTGTCCGTTGTGTGGGTAGGGCTGGAGGGGTTGAATTGCTCAAATGTCTTCGCAAATTAGAGCAAATCGGGATTATTATCCTTCCTGTTGTCGAACACCTGATTTTTGTC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCGATCATCCCTGGAGGGATAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 4717426-4717846 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKK01000002.1 Thermostaphylospora chromogena strain DSM 43794, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4717426 30 100.0 33 .............................. CGGAAATTTATGGAGGAGTCGAGTTGGAGATAC 4717489 30 100.0 33 .............................. ATCCACTGGTCGAGCTGGGTGGAGCGGGCTCCA 4717552 30 100.0 36 .............................. TCGGAGACGTTCATGCCGCTTCCTTTCGTTTGCTGG 4717618 30 100.0 38 .............................. ATCTCAGTGATGTCCCGGTTGCGCGCGATCTCCCGGAC 4717686 30 100.0 35 .............................. TGACACCGGCGGCAGACGGGGACGGCGTTGTCCGG 4717751 30 100.0 36 .............................. GGCGTACGCACGTGGTCCAACGCCTGCCGTAGGCAC 4717817 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 35 GTCCTCATCGCCCCTGCGAGGGGTCGCAAC # Left flank : CTCTGCGCGAGGCGTGGATGCCCTGGCTGGAGCAGCGCAACAACGACCGCATCAAGTCACGTCACCCGCTGTGCAACGTCTTCATGACCCAGACCAGCGACACCGCGGCCATCCGGCATGCCACCCTCAAATGCGCCTACCAGCGGATGATCGAACTCCTACCAGCTGTCTGAACACCCCCATCTACACCGCCCTCTCACCATGTGATCCGTAGAGAAGGCAGATGCCTCACCGACCTCACCCGGCCCTGCTCAGGTAGGAGATATGGTCCGGTGGCAGGTGATGGTGCGAGACGGTGTTGCTGTACGAGACTGCCGTACACCACCTCAGCGGACATGGCCCCCAGCTACGCTGGTACCAAGACAACGCCTACGGCACAGGTTGCTTGAAATCAAAGTTGCAGCGAACCTCCAGGGGTTTCTGCACAATCGGAGGTTCACTGCAAAACAACGACTTCAGCACTCCAAGAGATGCCTGTTAACCTGCGGCTTTACCATGGG # Right flank : CTTGCACCGCTTGAGCGTCTTGGCCTTGCCGACCAGTCCTCATCGCCTCGCCGAGAGCAGTTGGACGCTTTCGGCGAACCGGACCAGGCTCCGTTTCTGAGCCCTGGTCCGGTTCGCCGCTAGCGGGTGGAGTTCAGGCCATGGTTCGTATCGCTCGGTCGGCGGAGCGACTCTGGTCCAACCGGATCTGCTCGGTAAGCCAGTCCAAACCTGCGAGGGTGGCCAGTTTGACAAGGCGCCGGATCAAGCGTTCGGCTCCGATCCAGGTGGTCGCGAAGTCGCGTACCACGTGGGCGATCAGAGTGGGACCATCTGCAAACTCGTCGGCGCAGATACGGCTCAGCAGGCGGCGGTAAGGAGTTGTCGCACCGGTCTTGTCGTCCTCGGCGAGGTGCCGGATCAGCGCGTAGCGTGCTTCCCGTACGTCTTCGTTGTGGAGGAAGAGCTCTTCAGGGCTGGGAACGGGGGCGTGAGGCAATTCAGGGACGAGATGTTCCTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 5 4731629-4730939 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKK01000002.1 Thermostaphylospora chromogena strain DSM 43794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4731628 30 100.0 37 .............................. ATCTGCGCGCCGCCGCCGCGGCCGCGGACGGCGACCG 4731561 30 100.0 36 .............................. TGTCGCTCCGCCAGAGAGCAGACCGAGGGCGATTAG 4731495 30 100.0 34 .............................. TGTCCTTTCGTACCCTTTCGCAACCAGTGACCCG 4731431 30 96.7 39 .............T................ CCGTGGCAGCGCTGGTCCTTCAGCGGGTGTTTGACGAGA 4731362 30 100.0 37 .............................. ATCACCGACACGCCGGGGATCTCCGCACCAGCGGCGG 4731295 30 100.0 38 .............................. AGTCCTGGACCGCCGCCGAAGATGCCCGCGGCGCGAAG 4731227 30 100.0 35 .............................. ATTTCGAAGCTCTGGAGCACGGCCGCTAGTACGGC 4731162 30 100.0 32 .............................. ACCACGTAGGGTCGCAGCTCGGCGGGCAGGGA 4731100 29 96.7 37 ...................-.......... ATCTGAAGCCCGGTGGTGTGGAGCTGGGCAAATGGCG 4731034 30 96.7 36 ..T........................... CTCACGTGCGAGGCCTCACCCGCGCGTCCCTGACTG 4730968 30 93.3 0 .........A............A....... | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 98.5 36 GTCCTCATCGCCCCTAAGAGGGGTCGCAAC # Left flank : GCAACGTCGCCTACGACGAGCTGATGTACCTGGAGGCGCTCCAGCTCACCCGTACCTGCCTGGAAGGCACCCCCTACAAGCCTTTCAAGATCTGGTGGTGATCCGGTGTACGTGGTGGTCGTCTACGACACCCTAGCCGCGCGTAATGCGGCCATCTTGCGCCTCTGTCGTCAGTACCTGCACCATGTCCAGCGCAGCGTCTTCGAAGGCTCGCTGAGCCCGGCGCAACTGCGGCGTTTTCGGTACCAGGTCGAAGGAGTGATCGATGCCGGTTACGACAGTGTCCTAGTGTTCACCTTCCCGCCCGGAACGGCCCCTGAGCGACAGGAATGGGGCGTCGCCCAAGCCGCTCCCACCGATGTCCTATAACCTGAAGAGAACCATGTTGATCATGAAAGTGCAGCAAACCTCCCGGGGTTTCTGCACAACCGGAGGTTCACTGCAAAATCCCTTACGAAGCCCTCCAGATCCCCGGCCTCTACCTGCGGTTTTACCGTGGG # Right flank : TAGGTCCGTAGCGGGCCGTGATCGTTAAGGCGGAATGGCGATCGAAGGACGGATGGAGATGCGAGCTTTGCGGAATGGGGTGGGGAGGATCAAGAAGGTATGGGGTGGGTCGGTCTCAGGATGGGTGCTGGCGGCCGTGGCCGGTGTGGCGGCGGCGGTGTCGGCGGGGACCGTTCCAGATGTGATCAAGGGATGGTGGGGGGATCAGCGGTGGTTCTTGACCGTGCTGTGCGTGGGCGCGGCGGCTATGTTCGCGGTGATCAACCTGTGGCAGCAACGCAGCAAGGGCGTGGGCATCGTGGTGGCGCTGCCGCGGGAGAGGTGGCGGAAGCCATGGAGCGGTCAGTGGATCGACGCGGCGATCGATCACGCGCGTAAGCACCATGACTCCTGTTTCGCGGTCCGGCGCACCATCCCGAGCGAGGCCGATCCCGAAATGGAGCGGAGAGCGCGCAAGGATGCGTTGGAGCTGGCGTATGAACTGGTCACTGCTCGGCTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAAGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 6 4740353-4739998 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKK01000002.1 Thermostaphylospora chromogena strain DSM 43794, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4740352 30 100.0 34 .............................. GACCACGAGGGAGTTGGAGGTCACCAACCAGGAC 4740288 30 100.0 34 .............................. GACCACGAGGGAGTTGGAGGTCACCAACCAGGAC 4740224 30 100.0 37 .............................. CGGTGGTCGTGGAGATCCCGACTAAGGAGGCCGTGGT 4740157 30 100.0 36 .............................. GCGCAGGACAGCATCAGTGATCACTACGTGCTCCTT 4740091 30 100.0 34 .............................. CCGGGGCCGAACGCCGCGCCCTCCACGGCACCAC 4740027 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 100.0 35 GTTGCGACCCCTCTCAGGGGAGATGAGGAC # Left flank : AGTGGCTGATTCAGAACAGATGGCCGGCCGACCGTCCGCGCCCGCGCAACAACGCCGAAGCTGCCGCGGCCATCTCCGAAGCAACCGGTGAAGAGCTGTCCTCCACCGCCATTTGGAAGCTCCGCACCGGCCGCTCCGACAACCCGCAGCTCAAGACACTCAAGGCTCTGTCCCGCTTCTTCGGCGTCCCGATCGGCTACTTCGGCGACGACGACACCGCCGAATCCCTCCACGACCATGCCGCGGCCGCCTCCCTCGTCGGCGAGTCAGGCCTCAACCGTGACGCCCTCCGCGCGCTGGTCGAACTATCCCCGTACGGTCGGCAGCTAGTCGCCGACTTCATCATCAACGCCGCTCGCTTGGAACAACACCGCAACCGCTCCACCGCCGACCAGCCACGCAACTGAACGCAAGTACCCGTATCGCACGTATTGCTCGTGGCCGTCCCCAAAGGCGATGCGGGCGCCTCTACTCCTTCAACGCTGCCGATGGAGCCGTGT # Right flank : CCCATAGTAAAGGCGCAGGTCAGCATCTTATTTTCTGCTGACCGGAGGAGATGTTTTGCAGTGAACCTCCGGTTGTGCAGAAACCCCGGGAGGTTTGCTGCAGAACTTCACCTCACGATCTCGCTGTTGAGGTGGAGGTCTTTTAGGGCAGCAGGTTAACCCGCCTGCCCACCCGAAGGCGACCTTCCTTCTCTCGTTACCCCTCTCACCTGCACGAATGCGGTTCGCACCGTGAGGTTCGGGCCTTTGTCCATCTGTAGTGGGTGAGAGGAAACAAAGGAGGTCCCTGTGAGGGTTCGGGTCGAGATTGCGACGGCGGCCACCGAGTTGCCGTGGGCGAAGGTGCTGGCTCCGGGCCGGTCTTTGGCGTACGACCTGTTGGCTCGGTTGGCACCTGCCCTTGGGCGCCAGTTTCACCAACAGGGCGCTGGGCCGTACGGAATGGTGCCGATGGGGCATAGTGCGCCGGTTTTCCCCAAGGCTCCGCGCAGGCGTGGTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCCCTCTCAGGGGAGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //