Array 1 25330-23843 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBX01000002.1 Streptococcus mutans strain UAB-22 NODE_2_length_352301_cov_22.964, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25329 36 100.0 30 .................................... GAGGCACGTATAGAGAAGACATTCTCTTCA 25263 36 100.0 30 .................................... TCTGTACTCTCCATCCTTTGGGCCTTCTAT 25197 36 100.0 29 .................................... GAATGGAGATGTCTTATATGTTGGTTCAT 25132 36 100.0 30 .................................... AAAAATAGCGATTGACACGCTAGAAGCTTC 25066 36 100.0 30 .................................... GTCAAACTGATTGGACAAGTAAACAGTTTG 25000 36 100.0 30 .................................... GATTTGCACTTTTTAATAACGCTGCTTATG 24934 36 100.0 30 .................................... TCGTACTTACGGACAAGGCTTGTGAAGTCA 24868 36 100.0 30 .................................... GTCAAACTGATTGGACAAGTAAACAGTTTG 24802 36 100.0 30 .................................... TTACAGCTAAGACTAATGCTAAAGCGACAG 24736 36 100.0 30 .................................... TCCATGGAGCGTTGACTTCACTTAAAACTT 24670 36 100.0 30 .................................... AATATAGCCCGTATGACCATAGCTATGACC 24604 36 100.0 30 .................................... ATTCTGGCCATAAATCACTGCATGCTATTG 24538 36 100.0 30 .................................... TAAAATCCAAAACTTACGTCCTTTCCATTT 24472 36 100.0 30 .................................... TATATTCCATTTCCATGAAATTTCCAATCT 24406 36 100.0 30 .................................... CTCACTTCTATGTTGCATATGCAGATGATG 24340 36 100.0 30 .................................... CAAGTGTTTTTTTAAGTTTTTAGCAAAATA 24274 36 100.0 30 .................................... ACGGCTCTGCTCCTGCACAGATCGTGGTCA 24208 36 100.0 30 .................................... CGTTCTTCGGTTATGACTCTTACGGTCTGA 24142 36 100.0 30 .................................... AATTCCTTTGATTACTTTCGAGGCAATGAA 24076 36 100.0 30 .................................... AAAATCAGACGCAGAGTCACGCAGACAATC 24010 36 100.0 30 .................................... TTCGACAACAAGCAAAGACACGAGTTGTTT 23944 36 100.0 30 .................................... ATAAAAGTCGATCAAAACGTCTATCTTTAA 23878 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TATTAAAGAATATGGATGATTACTTAACTTATCCATCATTTATTTTAGCATGCCAAAAATTAGAAAGGTTATGTATGAAGTTTCCTTATTTTCAAGTAATAATTTTTCCATCAAATGAAGGTTATTTATATGCTAGACAAAATAATATTGAGTATGTCAATATTATTTCAGATTATGTAGCACATTATTATCAATTTGATTTTTTATTTAATAGATTTATTGAGCAATACCCTACAAATCAACTTCCAACGAAAGCTGACTTTTTATCTTCGATCCAAAAAATTAGTAGTTATTTGTTTAGTAAAGAAATAGAATATGTGAGCCTCTCAAATAAAGATTTAGTTACCATTAAAATTTTAAATAATCTTTATCAATATGATAAAAAAATAAACTATCCTATTCTAGATTCAAGTCCTCTCGAAATTAAATTTTTAAGAGATAACGACTGATTTTATGGTATAATCATGTTGAAGTACAAAAACCAAGAATGACGATTTGAG # Right flank : AAATCATAGTCGATATCGACACACTACATGGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAACGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 21660-24003 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBX01000008.1 Streptococcus mutans strain UAB-22 NODE_8_length_25502_cov_25.5732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21660 32 100.0 34 ................................ TGTTTGATGCGTATACTTGTTTTCTGTTTCTATC 21726 32 100.0 34 ................................ ACCACTTCGCCTTGCGCTAATGTTTAATACTGGT 21792 32 100.0 33 ................................ TTTTCGACAGCTAAGGCTGTTACATAATCACGT 21857 32 100.0 34 ................................ ACAAGCAATTCTAGGCTATGTCGAAAACTCAGAA 21923 32 100.0 33 ................................ AAGGTGGAGCGCAAGCGTAAGCTAGTTGATTAG 21988 32 100.0 34 ................................ TTTTGGAAATCGCTCAACAGCTTATCTTTATAAC 22054 32 100.0 35 ................................ AAAATTTCTTGCACAACTGATACGTTATCGTCTAG 22121 32 100.0 33 ................................ AATACCCTCCCTTGCTCCTTGAGTACTTCTTCA 22186 32 100.0 33 ................................ CTATAATTTTTGAATGAAAAAGCGTCGCCTTTT 22251 32 100.0 33 ................................ TTCGATTATCGTCAACCGCCGTTCCGCGTTTGC 22316 32 100.0 34 ................................ AAAAGCTTTTGGCGGGTCTCAGAAAGAGGCTAAG 22382 32 96.9 35 .................G.............. AGGTACAGGGTTCTTTCCAAGTCTGGTTGAAGCAA 22449 32 100.0 34 ................................ TTAGCAAACAAATCAACTAGATAGCTATAAAAAT 22515 32 100.0 34 ................................ AACGAAAATCATTGAACGTGTGCGCGATTATACG 22581 32 100.0 35 ................................ TTGTCAGCTCTTGCATTACAGTTGCTGTAGTTACT 22648 32 100.0 34 ................................ AAGGTGGAGCGCAAGCGTAAGCTAGTTGATTAGA 22714 32 100.0 36 ................................ TATGATTGTCAATCGTCGTTCAGCATTAGCAACACG 22782 32 100.0 33 ................................ ATATCTTCTTTATCCTCTCGTCCATTTTTTCGA 22847 32 100.0 34 ................................ ACGCTGTCTTTTTTGCCATTGACGACTTCATGCA 22913 32 100.0 35 ................................ AAGTACATGTATAGTCTTAGTGACTGTGTCAGACT 22980 32 100.0 36 ................................ AAAAAATACTCGCGTTTCTTTTTTTGCTCAAGTAAG 23048 32 100.0 34 ................................ ATTTTTCTAATGCCTCCTCAATTGTAAACTCAAT 23114 32 100.0 35 ................................ ATTTGTCGCAATTCAGCTTCATCCCTTGGGAACAG 23181 32 100.0 35 ................................ TGTTCCTAAATCATCTAAAACTAAGTAATCCAAAC 23248 32 100.0 33 ................................ AATTCTTCTTCGACTTCTTCCGCTGATAGCCGT 23313 32 100.0 32 ................................ ATCAAATCTTCGTCTGTATAATCTTTTAGCGC 23377 32 100.0 34 ................................ AACATAGCCTAAAATAGCTTGAGAATACTCAAAA 23443 32 100.0 34 ................................ TGTTAGCTCGAACTCGTGTAATGCAGGTTTAGCA 23509 32 100.0 35 ................................ ACTGAATAGTTCAGAAGCCAATTCTGTCGTGACTA 23576 32 100.0 34 ................................ TTCTGACTAGTTGTATAATTATCAAAAAAGAGCT 23642 32 100.0 33 ................................ ACGCGGGTTCCGGGCTTTTTTAAAAGAGACCGG 23707 32 100.0 36 ................................ AAAACGATATTGGAACAACAATTACGACTCCAACAG 23775 32 100.0 34 ................................ TTGGATGATCCGTAATGAAAAAGGAAATGAGAGA 23841 32 100.0 33 ................................ AATTATGAAAGCTCAGTATGGACAACTTGATAA 23906 32 100.0 34 ................................ TAGAGGAGAAGCAGAAAAATACGTCCAAGAATAC 23972 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.9 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTTCAAAAAATCCTGAAATAAACACTTCTGGTTTTTGTCGCACCCTTTAAAGGTTGGGTTTGCTTTTTAGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTCAGCAGGTGGGTGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //