Array 1 421680-422257 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025799.1 Dickeya zeae strain MS2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 421680 29 100.0 32 ............................. TATGTAACCCCGCTTTATAATCGGGATCAGCC 421741 29 100.0 32 ............................. ATGTGTAAAGGCATAACACCGTCCTGTTTTCG 421802 29 100.0 32 ............................. CGTGTTACTTTCGCGACGGTGAACGCCCTGGC 421863 29 100.0 32 ............................. TGATTGCGACGAAATGCAGTTATGTGGCCACG 421924 29 100.0 32 ............................. CGTATTATTGATAATCAAAAATAATACGACAT 421985 29 96.6 32 .....................G....... GACAGCCCGGTATCGGCGGCAATCGTGGCGCA 422046 29 96.6 32 .....................G....... ATGAGCAAAAATGATTTTGTAATGACCCATAA 422107 29 96.6 32 T............................ ATGTTTTTCGCCCAAATGGAAAAACGGCAGAT 422168 29 100.0 32 ............................. GAGCCGGAAAGCGAGAAGGTGAAGGTGGATGA 422229 29 82.8 0 ..A........A.............GG.A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTACTGGCCGCCGGTGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGGCACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTTTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGCGACACCTCGCGCCGGGTACGGGAAATGATCTGGCAACAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAATCCGGTTTTGAGTTCCAAACCTACGGTGAAAACCGCCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTGGAATTTTACGGCCTTCAAAATACCTTATAAAACAGGTATATACTTTTAGA # Right flank : AGAAATAAATCGGGCACGCTGTGTGATTACGCGTGCCCGATGTGGGTGACCGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGCGGGTTTTTTGAGCGCCAGTGTCTTCGCTGCCTGTGCGGATGAGGGCGCAATCATCGGTCGGTTGCCCGCCAGATTGTAAGAGCCGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGGGATTGCGTGGCATTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCAGGTTGACCTGCTCGATGCCCAGTGACTGCTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGGTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 677511-678150 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025799.1 Dickeya zeae strain MS2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 677511 29 100.0 32 ............................. CAGTATGTTGATTTGCGCTTGCGTAAGAAATG 677572 29 100.0 32 ............................. TTCAGGAAAAAATGACAATTCACTATTGATGA 677633 29 100.0 33 ............................. CTGGTCACTGACGACAGATTAATACTGCCGGTA 677695 29 100.0 32 ............................. AATCAATTCCGGCGCGATATACGACGGATTGA 677756 29 100.0 32 ............................. CTGATCGCCAACATCGACAACGTAATCGCAAC 677817 29 100.0 32 ............................. GTAATTCACCGTAAAACGGGAAATTCCCGGGT 677878 29 100.0 32 ............................. AGGAATTCATGTATTTTACAATCACTATAATT 677939 29 100.0 32 ............................. ACCATTGCCGCGCCGGTCATTGCCTTGATCCC 678000 29 100.0 32 ............................. GAAATCGATTCGGTCAGCCTGCCGTTATTACA 678061 29 96.6 32 ............T................ ATCAGCTCCAGCGTGTTTTTCCAGCCGCCCAG 678122 29 82.8 0 ............TT...........G.GT | ========== ====== ====== ====== ============================= ================================= ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCACTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACGTCGGTGGTAATACCGGTATAAAGCCACCCGCTGCCGGTGCGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGAAAATTGCGACCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTGAAAAAGTCGGTGGAATTTTTCAGGCTTTAAAAGTCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTGCCGTGATAGCACGGCACAATCCGTCGCGATGTGTTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAATGGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACTACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATCTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAACGCGGCCATCGCTTATGGTGCTGACGAGGTCGACG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3818059-3818628 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025799.1 Dickeya zeae strain MS2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3818059 28 100.0 32 ............................ AGGCTACCTGGAGGGAGCCAAAAACTGGGACA 3818119 28 100.0 32 ............................ TTGATATACCGGGCCACCAGCGCCAGCTAGGA 3818179 28 100.0 32 ............................ ATGTGCCGGCGATCCAGGAGGTCTGCGCCTGC 3818239 28 100.0 32 ............................ TGGCTACCATGCTCACGCTCCCATGCGCCAGC 3818299 28 92.9 32 ...........CA............... TTTCAGCGGGCCATATGCCGCACGCATAGCGG 3818359 28 92.9 32 ...........CA............... GTCGCCAATCAGCTTACGACCATATGCGTTTA 3818419 28 92.9 32 ..TC........................ CCAAGTTGCAGGGGCTGATGGAGTTATCAACC 3818479 28 92.9 32 ..TC........................ TGATCTCATTCGTCTCCGCCAAGTTTCGAGAT 3818539 28 96.4 32 ............A............... ATTGTTGTTGCAATCGAAGCAGCAGCAGAAGC 3818599 28 78.6 0 ............AC.........G.TGG | GG [3818620] ========== ====== ====== ====== ============================ ================================ ================== 10 28 94.7 32 GTGAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGAAATCCCGCCCATGGCGATATCGCACTGGTCAGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCCACGTTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCAGCCAGCCCCAATAACAACATCAATGAAAACCGTTTTTTCATAAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGCCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTAAAAAAAGGGTCTCACGACCCAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCTCTCACCAGCCTGACATACATTCGCCAGTCAATAACAAAGCACCCCGGCTGTTTACCAACAGCCCCAAAACGTTACTCCACCGTCAACACCGCTACCGCCTTTTTGCGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGAATGTTGGTCAGCG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : GTGAACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3825140-3823672 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025799.1 Dickeya zeae strain MS2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3825139 28 100.0 32 ............................ CACCTCAAATGAGGGAGAAAAAACGGAAACAG 3825079 28 100.0 32 ............................ GTCAGCATTTCGGCCGTAGGTTCTCATTGTGT 3825019 28 100.0 32 ............................ AATGCAGCCCAAAGGAGGTAGGGGGGACGAAC 3824959 28 100.0 32 ............................ CAGCGGGAGAATTCCCGCTTGGGGTTCTCCTT 3824899 28 100.0 32 ............................ TGATTGTTTGTTACGGATGATCAGCACGTTAT 3824839 28 96.4 32 .............C.............. TGCGGCGTGGTCGTAAATGGCGTCCAGCGCCT 3824779 28 96.4 32 .............C.............. TGATGCCATCCGTAGATCGGCGAACTCGGTTT 3824719 28 96.4 32 .............C.............. AATGTGTCTACTGACGTAGAACACCATTACTT 3824659 28 96.4 32 .............C.............. CCCATAATCATCGTATAAGAGATAATAAGTGC 3824599 28 96.4 32 .............C.............. GTTATCATGTTGCAGCTATGCCAAGCATGGCT 3824539 28 92.9 32 ...........T.C.............. GAAGCGGGCACACACTGCACTGCACTGGACTA 3824479 28 96.4 32 .............C.............. TGTCGATCGTGCAAATGCGACGTGTAAAGAGA 3824419 28 100.0 32 ............................ TTGCTCAGCAGTCGCCAGAATGGGCCAATATC 3824359 28 96.4 32 .............C.............. GGTTAAATGTCCACTCGTAGACCTCGGCCCCA 3824299 28 96.4 32 .............C.............. GCACGCTGAAACTCAGACACCAGGGCGCGCGA 3824239 28 96.4 32 .............C.............. TTCCTGGCGAGAGGTATCGCTGCTCACAATAT 3824179 28 100.0 32 ............................ GTACAGCTCGCTGTCGTTACAGTGCCGGTCGA 3824119 28 100.0 32 ............................ TTTAATTGCCATTCATGCAGAGTAGGCAGGAA 3824059 28 89.3 32 ...........AG............C.. GGCGACACCGGCAGCGGCCGGTCCCCCGGATG 3823999 28 92.9 32 ...........G.C.............. CGATGGCCCTGTCACCTGCGCAACGCCATAAC 3823939 28 92.9 32 ...........AG............... TGGGTAAAGCTGACAGAGCAGGCAGAACGCAC 3823879 28 100.0 32 ............................ GACGTCTGACGCGGACAGAGCGTTTTTAGTTG 3823819 28 96.4 31 .........................G.. GTGGAAAACGGGGAAACAGCACAGGCTTTCG 3823760 28 92.9 32 ...........AG............... TCTCGTAAGGGCTTTTGTCGTCAACATTAACA 3823700 27 82.1 0 ...........AG..........-..CG | GG [3823677] ========== ====== ====== ====== ============================ ================================ ================== 25 28 96.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGAGGCACTGCCGGTACCAACGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAAGTGAAAAGCAGCGCTGAACGCCTGCGCCGCCGTGCGGTGAGCAAAGGCCGAATGACTGCGGATGAAGCCGCCGCCCGCATTCCTTATGCGGCAGAAAAGCGCACCTCGCTGCCGTATCTGCCGCTGCGCAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGATAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCGCAACCTGGCCGCCAGAAAAAAGGGTTTTTCCGGAAAAACGGCGATTTTTCTTTAACAATCAGACGATAAGCGATTATTCGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACTCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGTCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCACCCACCAGCCTGATATATATCGCTAATCAATAACAAAACACTCCGGCTGTGTGTCAACAGCCCCATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAAGCAGCAGCGACGCGCTGTACGTTGTGATGGTTTAACCCGGCGATGCAGACACGGCCGCTGGCGATGAGATACACGCCGAACTCTT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3834173-3835761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025799.1 Dickeya zeae strain MS2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3834173 28 100.0 32 ............................ TTGGCGCTCGAGTTCAAGCCTCACATGCTGGT 3834233 28 100.0 32 ............................ GAAACTATCGGTATGGGCATGAGCGGGCAGAA 3834293 28 100.0 32 ............................ AGCACAGGCGTTAGCAAAAGCCTCATGCCACC 3834353 28 100.0 32 ............................ ATATCGAGCGCCCCGGCTTCCAGCCCCAGGTC 3834413 28 100.0 32 ............................ GCATTGCGCGATCGTCGATGAGTATCATGAGC 3834473 28 100.0 32 ............................ GCTACACGATGATGCCGTGGATCACGAACTGG 3834533 28 100.0 32 ............................ CATCGCCGGGGTTAGTGTTCCCCATTCGATTG 3834593 28 100.0 32 ............................ GCATGTGATTGTCGAGCTGATTTAATGCAGGT 3834653 28 100.0 32 ............................ ACGTTACCGAACGCCACGCCCGCGTTTTTGCA 3834713 28 100.0 32 ............................ CAGCAGCACGCGGCCAACGAACAGCCGCAGCG 3834773 28 100.0 32 ............................ TGTGAAAGAAATCATTACGCGAACCGTGAAAG 3834833 28 100.0 32 ............................ TGATAATCACCCGTGGCTATCCTCGCCGCGAC 3834893 28 100.0 32 ............................ AGATGGACATCCTAAACGCAAATTTCGGAGGT 3834953 28 100.0 32 ............................ ATCAGATAGCCGCGACACCGGGCAAATCGAAC 3835013 28 100.0 32 ............................ TGCGCGGCACCTTCATCACCAGTCTGCCGGAT 3835073 28 100.0 32 ............................ GGCGGAACAATCTCGATGTTGCGCAGGCCGCA 3835133 28 100.0 32 ............................ TTGATGAGCAAGGCGATGATGCGATGGACAGC 3835193 28 100.0 32 ............................ AATGGATACCGCATTCGATATCTGGAAAAAAC 3835253 28 100.0 32 ............................ TTCGTGCAATCATACGTGCCATAGATACGCGG 3835313 28 100.0 32 ............................ TCGGCGCTGAGCTGTATGAGCAGTTCAGCACA 3835373 28 100.0 32 ............................ TCTGCCACGGGTTACCAGTCTGCGTCCTCTGC 3835433 28 92.9 32 ...........AG............... GCTATTCGCGGAGTGCTCAGAGTCGCAGGAAA 3835493 28 92.9 32 ...........AG............... ACGCGGCGCGAAATCATGACCAGCGGTGACAC 3835553 28 100.0 32 ............................ TGGCGACGGTGTGTGAATTCGACCTGGAATGT 3835613 28 89.3 32 ...........AG...A........... GCTAACAACAGCAACAACTTGTTTGTTAAAAA 3835673 28 92.9 32 ...........AG............... ATCATAAGTTTGTAAAACGAGTATGGTGGAAA 3835733 27 82.1 0 ...........C.C.........-..CG | GC [3835752] ========== ====== ====== ====== ============================ ================================ ================== 27 28 98.2 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAGGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTTCCTTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGTTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCACGCAATGATACGCAGGCTAATAGTTCGCCAGAAACATGTAATACACTGGAAAGTAACGAGAATTAACCTAGCACAGCCCCAACGGGAAAGTGAATGACGCCGAAAAGACTTTCCTTATTTTCATACCCTTTTTTTCCGCTGTCTTTTTCGATATTGAAAAATCAACAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCGTGGGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGCAGGGCGAGCCCCAGGGATGGGGCGAGTAACCGCGTCACAGGCGGCCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCATCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGTACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCACTCTACCGATAATCCTCACTATCTAACACCCGGATCTAACGCCCGGGAAAGGGCAACCTATCAGAACGACGTCCAATCACTATTGCTACCCGCTGCCGCGGCGGCCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //