Array 1 1-150 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL891586.1 Acinetobacter baumannii 6013113 Scfld1408, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 1 30 93.3 30 ............................AA TTGCTGTGACCGAGCCAAAGCGGAAATAAA 61 30 100.0 30 .............................. GCCGCGTGGGTAATGAACTGCTTTTTGTAC 121 30 86.7 0 ..........................NNNN | ========== ====== ====== ====== ============================== ============================== ================== 3 30 93.3 30 GTTCATGGCGGCATACGCCATTTAGAAATG # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATGGCGGCATACGCCATTTAGAAAGTTATGAAGTTGACGGTCTTGTCTCGCCTGAAGTTCATGGCGGCATACGCCATTTAGAAA # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 127244-128139 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL891599.1 Acinetobacter baumannii 6013113 Scfld1728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================== ================== 127244 30 96.7 30 ............................A. TATACCTAGCATCCCCTTTGAGTTCTTCTG 127304 30 96.7 30 .............................G AAAGTTAAGTCCATTTTGTTCAGTAACAAT 127364 30 93.3 30 ............................AA GAACCTGTATTTGATCCTGATACGCCATTG 127424 30 93.3 30 ............................GA CACACAACCCAAAAGATTGGCACGTTCAAG 127484 30 100.0 30 .............................. TCATCAGTAGCAGAGTTAGACCCTTCAATC 127544 30 100.0 30 .............................. GAAGATGAGCTAACAAATCAACGCCAACTT 127604 30 93.3 30 ............................CC ATTGCAAAGCCATTGCATCTGCAATGCCTT 127664 30 100.0 30 .............................. ATTTAAAAGGAGCCAGCCATGAGTGAGTTT 127724 30 93.3 30 ............................AG AGGGGGTACGCAGATTGTGCGTACCCTTTT 127784 30 86.7 63 ..........................NNNN NNNNNNCATGGCGGCATACGCCATTTAGAAAATCTGGTAACCGTTTCGGTGATACCACTTGGA 127877 30 96.7 30 .............................G CTTAACTGTTCTGTCACTCAATTGGCAGAA 127937 30 93.3 30 ............................AG TTGCACTCAATGGTTGTGAGTCCGCCATGT 127997 30 90.0 83 ...........................NNN NNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAATGAGAAGCCGAAAGCAACACGAGCACATTGAA 128110 30 93.3 0 ............................CA | ========== ====== ====== ====== ============================== =================================================================================== ================== 14 30 94.8 37 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : CGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATAGTTCATGGCGGCATACGCCATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATGGCGGCATACGCCATTTAGAAAAAACATCTTTATTGAAGCTCTTGCTGTATCTG # Right flank : AAAAGTATTGCCGCAATGCCTTCTCAAATACGTTCATGGCGGCATACGCCATTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAATTAAGTGCATCGATCGCATCCGCACCGCTAATGTTCATGGCGGCATACGCCATTTAGAAAAAGAATAAACGCATTTTAGATGGTATTGAAGGGTTCATAGCGGCATACGCCATTTAGAAAAATGCGCCTCAGCTATCACAAAAGTCGAGCAAGTTCATGGCGGCATACGCCATTTAGAAAGCATAAAAGTACAAACTAGGGTCAATGATGTAGTTCATGGCGGCATACGCCATTTAGAAAAAAGGATTCTTGCTCAAACGCCGAGGTTATAAGTTCATGGCGGCATACGCCATTTAGANNNNNNNNNNTTCATGGCGGCATACGCCATTTAGAAAGCAAGGCGACTGCAAAAAATACT # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.41, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 128313-128797 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL891599.1 Acinetobacter baumannii 6013113 Scfld1728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 128313 30 100.0 30 .............................. GAATAAACGCATTTTAGATGGTATTGAAGG 128373 30 96.7 30 ......A....................... TGCGCCTCAGCTATCACAAAAGTCGAGCAA 128433 30 93.3 30 ............................GC ATAAAAGTACAAACTAGGGTCAATGATGTA 128493 30 100.0 30 .............................. AGGATTCTTGCTCAAACGCCGAGGTTATAA 128553 30 86.7 5 ..........................NNNN NNNNN Deletion [128588] 128588 30 90.0 30 N...........................GC AAGGCGACTGCAAAAAATACTTCTGGACTA 128648 30 96.7 30 .............................C AAATTGATTATACATTAGCCAAATTGTAAA 128708 30 96.7 30 .............................G AAGAAATGCAAGGCCGCAATCTGTCATTCA 128768 30 90.0 0 ...........................NNN | ========== ====== ====== ====== ============================== ============================== ================== 9 30 94.5 27 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : NNNNNNNCATGGCGGCATACGCCATTTAGAAAATCTGGTAACCGTTTCGGTGATACCACTTGGAGTTCATGGCGGCATACGCCATTTAGAAATGCTTAACTGTTCTGTCACTCAATTGGCAGAAGTTCATGGCGGCATACGCCATTTAGAAAAGTTGCACTCAATGGTTGTGAGTCCGCCATGTGTTCATGGCGGCATACGCCATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAATGAGAAGCCGAAAGCAACACGAGCACATTGAAGTTCATGGCGGCATACGCCATTTAGAAACAAAAGTATTGCCGCAATGCCTTCTCAAATACGTTCATGGCGGCATACGCCATTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAATTAAGTGCATCGATCGCATCCGCACCGCTAAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGCATACGCCATTTAGAAATTTTGAAAGGTAAAGAGCCTAAAAATCTTACAGTTCATGGCGGCATACGCCATTTAGAANNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAAATGGATTAAAGACTGCTGAAACAAGAGCAGCTGTTCATGGCGGCATACGCCATTTAGAAAAAGAATTGTCTGCTGAAGACATTGAAGGAATTGTTCATGGCGGCATACGCCATTTAGAAATGATGCGCTGTTTTTGAACGTGTAATTGGATAGTTCATGGCGGCATACGCCATTTAGAAACCAAAGCGGTTAAGCCTCCAAGATTTGCATACGTTCATGGCGGCATACGCCATTTAGAAAATGGTAATACAATTCAATCTCACTACAAGAATGTTCATGGCGGCATACGCCATT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.32, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 129035-130310 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL891599.1 Acinetobacter baumannii 6013113 Scfld1728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================= ================== 129035 30 96.7 30 .............................A GAATTGTCTGCTGAAGACATTGAAGGAATT 129095 30 93.3 30 ............................TG ATGCGCTGTTTTTGAACGTGTAATTGGATA 129155 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 129215 30 100.0 30 .............................. GGTAATACAATTCAATCTCACTACAAGAAT 129275 30 100.0 30 .............................. ATATTTTACGTGTTGATTCAACTACGGGTG 129335 30 96.7 30 ............................T. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 129395 30 96.7 30 ............................T. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 129455 30 90.0 87 ...........................NNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 129572 30 90.0 30 NN..........................T. GCTCATCAATACAGCTACAAGAAAATTTGT 129632 30 96.7 30 .............................G CATAAGCATAAAAATTATGTGTGAATATCA 129692 30 96.7 30 .............................A TATGCAACAATAGGAAATTGCTCAGCATCT 129752 30 96.7 30 .............................G TTACATCATTGCTTTTAGTCTTTTCTATCT 129812 30 100.0 30 .............................. GGTCCGCAACCATACGGTCTATGACTTCCA 129872 30 93.3 30 ............................TC ATGATCATAGCCCTTATAGATATCGTATTT 129932 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 129992 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 130052 30 100.0 30 .............................. CTGCAAGACCACTGATAGTTGTTGAGAATC 130112 30 86.7 79 ..........................NNNN NNNNNNNNNNNNNNNNNNNNNNNNNGGCGGCATACGCCATTTAGAAATTTTGAAACTTATAGGCTTGGCTTGGGTTATC 130221 30 93.3 30 ............................TG AGGCGTAGCGTTTCCAAAGTTGCCCATTGG 130281 30 93.3 0 ............................CC | ========== ====== ====== ====== ============================== ======================================================================================= ================== 20 30 95.2 36 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : CAAACGCCGAGGTTATAAGTTCATGGCGGCATACGCCATTTAGANNNNNNNNNNTTCATGGCGGCATACGCCATTTAGAAAGCAAGGCGACTGCAAAAAATACTTCTGGACTAGTTCATGGCGGCATACGCCATTTAGAAAACAAATTGATTATACATTAGCCAAATTGTAAAGTTCATGGCGGCATACGCCATTTAGAAAAGAAGAAATGCAAGGCCGCAATCTGTCATTCAGTTCATGGCGGCATACGCCATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGCATACGCCATTTAGAAATTTTGAAAGGTAAAGAGCCTAAAAATCTTACAGTTCATGGCGGCATACGCCATTTAGAANNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAAATGGATTAAAGACTGCTGAAACAAGAGCAGCT # Right flank : CAAGCGTGACCAACTCACCAGTTGTCACAGGGTTCATGGCGGCATACGCCATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAATGAAAGGGATTTAAAAGCAGTTACATAAAATTGTTCATGGCGGCATACGCCATTTAGAAAAGCATCAAGTAGATCAGCAGTTACCTGTTCAGGTTCATGGCGGCATACGCCATTTAGAAATTAATTGGATTTCGTAAATCATTGAGCAAGTTGTTCATGGCGGCATACGCCATTTAGAAANNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAATTCTGTATTAGTGGCCTTCATGTGCATTAAAAGTTCATGGCGGCATACGCCATTTAGAAAATACATGCCCACGT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 130492-130857 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL891599.1 Acinetobacter baumannii 6013113 Scfld1728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 130492 30 86.7 30 NN..........................TG AAAGGGATTTAAAAGCAGTTACATAAAATT 130552 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 130612 30 93.3 30 ............................TT AATTGGATTTCGTAAATCATTGAGCAAGTT 130672 30 100.0 6 .............................. NNNNNN Deletion [130708] 130708 30 86.7 30 NN..........................TT CTGTATTAGTGGCCTTCATGTGCATTAAAA 130768 30 93.3 30 ............................AT ACATGCCCACGTTGAAAATCGGGTACCAGT 130828 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================== ================== 7 30 93.3 26 GTTCATGGCGGCATACGCCATTTAGAAANN # Left flank : GTTCATGGCGGCATACGCCATTTAGAAAGCATAGGCATTTACTCCCGCTGTGAGTGAAGGGTTCATGGCGGCATACGCCATTTAGAAAATCTGCAAGACCACTGATAGTTGTTGAGAATCGTTCATGGCGGCATACGCCATTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGGCATACGCCATTTAGAAATTTTGAAACTTATAGGCTTGGCTTGGGTTATCGTTCATGGCGGCATACGCCATTTAGAAATGAGGCGTAGCGTTTCCAAAGTTGCCCATTGGGTTCATGGCGGCATACGCCATTTAGAAACCAAGCGTGACCAACTCACCAGTTGTCACAGGGTTCATGGCGGCATACGCCATTTAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCATGGCGGCATACGCCATTTAGAAAGTATTAAAACTGCTTATAAACTTTCTTAAATCGTTCATGGCGGCATACGCCATTTAGAAAATTTTTTCTGTTAACTCTAAAATACCCTTCCGGTTCATGGCGGCATACGCCATTTAGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATGGCGGCATACGCCATTTAGAAAGTTGTCTGATCCGACAATTTGGCTGAGTACGTGTTCATGGCGGCATACGCCATTTAGAAATTGTACAACAATATGACCCGTATCGATGTAACGTTCATGGCGGCATACGCCATTTAGA # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.43, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAANN # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.10,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 131271-131540 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL891599.1 Acinetobacter baumannii 6013113 Scfld1728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 131271 30 96.7 30 .............................T GTACAACAATATGACCCGTATCGATGTAAC 131331 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 131391 30 100.0 30 .............................. TGATTGCTGGGAATGAAACATCAAAGCAAA 131451 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 131511 30 86.7 0 ..........................NNNN | ========== ====== ====== ====== ============================== ============================== ================== 5 30 95.3 30 GTTCATGGCGGCATACGCCATTTAGAAATG # Left flank : CATGGCGGCATACGCCATTTAGAAAATACATGCCCACGTTGAAAATCGGGTACCAGTGTTCATGGCGGCATACGCCATTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCATGGCGGCATACGCCATTTAGAAAGTATTAAAACTGCTTATAAACTTTCTTAAATCGTTCATGGCGGCATACGCCATTTAGAAAATTTTTTCTGTTAACTCTAAAATACCCTTCCGGTTCATGGCGGCATACGCCATTTAGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCATGGCGGCATACGCCATTTAGAAAGTTGTCTGATCCGACAATTTGGCTGAGTACGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAATGTCCGAAATTCAGATGGTGAAGTGACATATGGTTCATGGCGGCATACGCCATTTAGAAATTCAACCTACGCAAGTATTATGGGAACTATTTGTTCATGGCGGCATACGCCATTTAGAAAGTCTTTATCAGTTACGATGGCATGAGTTTTTGTGTTCATGGCGGCATACGCCATTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAAATATCTCGCAGATTTGGACAAGGTCACGAATAGTTCATGGCGGCATACGCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 6 132021-132361 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL891599.1 Acinetobacter baumannii 6013113 Scfld1728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================= ================== 132021 30 90.0 30 ...........................ATG CAACCGTGTAACCAGATTTCGCTTTAAAAG 132081 30 100.0 6 .............................. NNNNNN Deletion [132117] 132117 30 86.7 30 N..........................AAT CAATGTAATGCTCAGGCGATGCCTTATCAT 132177 30 90.0 30 ...........................ATT GGACAAAGATTATGACTGAGAAAGACGAGA 132237 30 100.0 65 .............................. NNNNNNNTCATGGCGGCATACGCCATTTAGAAATGTCATTGGCCGGCCATTCACAACCCCGATAA 132332 30 90.0 0 ...........................ACA | ========== ====== ====== ====== ============================== ================================================================= ================== 6 30 92.8 32 GTTCATGGCGGCATACGCCATTTAGAANNN # Left flank : GCATACGCCATTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAATGTCCGAAATTCAGATGGTGAAGTGACATATGGTTCATGGCGGCATACGCCATTTAGAAATTCAACCTACGCAAGTATTATGGGAACTATTTGTTCATGGCGGCATACGCCATTTAGAAAGTCTTTATCAGTTACGATGGCATGAGTTTTTGTGTTCATGGCGGCATACGCCATTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAAATATCTCGCAGATTTGGACAAGGTCACGAATA # Right flank : AACTAAAAGCTATTTATGGGGGTAAAAATTTGTTCATGGCGGCATACGCCATTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGCGGCATACGCCATTTAGAAACCAAAAAATGAGGAAATTGGACAATATCCAACAGTTCATGGCGGCATACGCCATTTAGAAATGCACCAAGTAAAGAATAAAACAATATACCGCGTTCATGGCGGCATACGCCATTTAGAAATCAAGGCGATCCACCTCCCGTCACAGTCATTTGTTCATGGCGGTACACGCCATTTAGAAATTTGCTAAAAGGATTTATGCTTTAAAATACTTGTTCATGACGGCACACGTCATTTAGAAAGTTGGCGTACGGATAACGGAAGAAAGCATAAGGTTCATGACGGCATACGTCAT # Questionable array : NO Score: 4.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.97, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAANNN # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 7 132539-132989 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL891599.1 Acinetobacter baumannii 6013113 Scfld1728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 132539 30 86.7 31 NNN.........................C. AAAAAATGAGGAAATTGGACAATATCCAACA 132600 30 96.7 30 .............................G CACCAAGTAAAGAATAAAACAATATACCGC 132660 30 100.0 30 .............................. AAGGCGATCCACCTCCCGTCACAGTCATTT 132720 30 90.0 30 ...........T.C...............T TGCTAAAAGGATTTATGCTTTAAAATACTT 132780 30 83.3 30 .......A.....C...T..........GT TGGCGTACGGATAACGGAAGAAAGCATAAG 132840 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 132900 30 83.3 30 .......A.A.....T.T..........G. GTTCAGGTTGAGGAGATGAAGTGATGTGAT 132960 30 66.7 0 ...T...A...T.....T..C...AGCG.T | ========== ====== ====== ====== ============================== =============================== ================== 8 30 86.7 30 GTTCATGGCGGCATACGCCATTTAGAAATC # Left flank : CATTTAGAAATGCAACCGTGTAACCAGATTTCGCTTTAAAAGGTTCATGGCGGCATACGCCATTTAGAANNNNNNNNNNTTCATGGCGGCATACGCCATTTAGAAAATCAATGTAATGCTCAGGCGATGCCTTATCATGTTCATGGCGGCATACGCCATTTAGAAATTGGACAAAGATTATGACTGAGAAAGACGAGAGTTCATGGCGGCATACGCCATTTAGAANNNNNNNNNNTCATGGCGGCATACGCCATTTAGAAATGTCATTGGCCGGCCATTCACAACCCCGATAAGTTCATGGCGGCATACGCCATTTAGAAACAACTAAAAGCTATTTATGGGGGTAAAAATTTGTTCATGGCGGCATACGCCATTTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 3.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.34, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //