Array 1 1120541-1118395 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR793267.1 Streptococcus salivarius isolate clinical strain from anonymous patient of Limoges Hospital, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 1120540 36 100.0 36 .................................... TTTACGATAGCAAAACGACCAGCATAACAATTTTCT 1120468 36 100.0 40 .................................... TCATTACGACCACAGTAATTAAAGAGTTGTACCAAAGCAT 1120392 36 100.0 34 .................................... GTCTTACTCATTTTGTTTACCTCTTTTATTCTTT 1120322 36 100.0 37 .................................... TAAGACTTTCCTCTATCGTCCAATTATAATCACTTGA 1120249 36 83.3 47 ............CC.....T.C..A..........G GGTATAGTGCTAGGGGTAGGCGCCTCGCTTGTACTTAGTGAAGTACG 1120166 36 97.2 38 ................................T... TGAGTTCCAATTGGTAAAGATAATTTTGGAATACTAAT 1120092 36 94.4 36 ..............C.................T... ACAGTAGCAACCACCTTATAGTTAGTTACCCCAAAG 1120020 36 88.9 36 .............CCG................T... ACTGCTCTTTTTTGCCATGCTTTTAATTGACTTTTG 1119948 35 86.1 36 ....C..T......C.......T......-...... CCTTTGAGCTATCTTTGTAGCTCCCTTTCTTTATCT 1119877 36 97.2 37 ..............C..................... TTAAAACATCACGACTTTTCGTGATTCCCAAAGTTCA 1119804 36 100.0 36 .................................... TTAGATGGTTCTGGTTCTTCTGGTTTAGATGGTTCG 1119732 36 91.7 38 .......C.....A.................A.... TCAGTCAACCAAACTTTAGTGTATTTTTCTAGCATTTA 1119658 36 88.9 40 .........T...C.......CA............. AACTCACGTACTTCTGGAATGCCAGGGATACCACCTTCAA 1119582 36 94.4 38 .....................G.............T TCCCATCAAACTAGATAGCTCCAGCGATCTTACAGTTT 1119508 36 91.7 38 .............A.......CA............. CGGCGAGCCGAGGCTACGGATTGAAGATGGTAACGATT 1119434 36 88.9 36 .........T...G.T...................T TCACGAGGCTTGAATTGCCAAGCATCATCAGACCAT 1119362 35 91.7 37 .............A-......C.............. TTTTTCACATGTGCTTTTACTGTTCTAACCGTTTTTT 1119290 35 94.4 40 .............A-..................... TGCTGAATTGGTGTCACTGTGATTTTTCCTGCAACTTGGG 1119215 36 91.7 36 .............C.G.....C.............. TCATTACATTTTTCCTCTCCAGTATCTTTTTGTTCA 1119143 36 91.7 34 ...G..........C.................T... ACAAGATAGCCTTTCTTGATCCAGTTTGAGAAAT 1119073 36 97.2 33 .............G...................... TCAACGTCATCTTTAGTAGTGTTTTTAACTTTG 1119004 36 94.4 34 .......T......C..................... AGTGGGTGACGATAACCAAAGCTTGTTGGTTCTT 1118934 36 91.7 35 .............G.......C..........G... AGTATTATTTTTTTGTCTTCCATTGTTGTTCTTTC 1118863 36 88.9 38 .......C.....CC.................T... CTGTTGGCGCAACGCCCCAGAAATTTCAATCCTAGCAT 1118789 36 97.2 36 .............A...................... TTGATTACCTTACGTGTGAAATCGTTGATGAAGTTA 1118717 36 88.9 36 .......C......C................AT... TTTTCCATGAAATGGATATAGTTAAAATTATCCAGA 1118645 36 80.6 36 ...T...G.T....CT.....T...T.......... TCGTTGACTTATGATCTTATCTCGATTCATTTCCAA 1118573 36 91.7 35 ..C..........C..................T... ACAAGGCTTTCTGTTTTTAAGTCATTGCTTTTCTC 1118502 36 91.7 36 ........A....G........A............. TATATACGCTGGAGCAGATAATACATAATATGCTTG 1118430 36 77.8 0 .....C.......A................TTTTTT | ========== ====== ====== ====== ==================================== =============================================== ================== 30 36 92.4 37 GATATAAACCTATTTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTCGACCCTAGTCTTTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGCGAAGAAGAACGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGACTATCAGTCTCTCCTTAAGGATATCGAGAGCTTCTACAAGGCTGATGAAGAAGACAGCATAATCGTATATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAAATAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGCAAACATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTATATCTTGTGTCTCTAGCAACTGTCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAATAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAAATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCAACCAAGATAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTGCATCTGCTTACAGATGACCTCGAGGCAAAGGCTTTTATGACCTTATTACAGATTAAAGAGGTATCCTTAAACGACTTACCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGTGCTGATAAACTGTTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAGA # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [36-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //