Array 1 3015950-3017502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045461.1 Salmonella enterica subsp. enterica serovar Anatum strain M-3851 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3015950 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 3016011 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 3016072 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 3016133 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 3016194 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 3016255 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 3016316 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 3016377 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 3016438 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 3016499 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 3016560 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 3016621 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 3016682 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 3016743 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 3016804 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 3016865 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 3016926 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 3016987 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 3017048 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 3017109 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 3017170 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 3017231 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 3017292 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 3017353 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 3017414 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 3017475 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3033817-3034334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045461.1 Salmonella enterica subsp. enterica serovar Anatum strain M-3851 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3033817 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 3033878 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 3033939 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 3034000 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 3034061 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 3034122 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 3034183 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 3034244 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 3034305 29 93.1 0 ............TC............... | A [3034332] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //