Array 1 437733-439102 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIU01000009.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_27 contig0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 437733 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 437794 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 437855 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 437916 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 437977 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 438038 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 438099 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 438160 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 438221 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 438282 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 438343 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 438404 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 438465 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 438526 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 438587 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 438648 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 438709 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 438770 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 438831 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 438892 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 438953 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 439014 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 439075 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 455726-458257 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIU01000009.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_27 contig0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455726 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 455787 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 455848 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 455909 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 455970 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 456031 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 456092 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 456153 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 456214 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 456275 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 456336 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 456397 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 456458 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 456519 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 456580 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 456641 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 456702 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 456763 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 456824 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 456885 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 456946 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 457007 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 457068 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 457129 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 457190 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 457251 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 457312 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 457373 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 457434 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 457495 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 457556 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 457617 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 457678 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 457739 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 457800 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 457861 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 457922 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 457983 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 458044 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 458105 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 458167 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 458228 29 96.6 0 ............T................ | A [458255] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //