Array 1 107752-106275 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFK01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033924 CFSAN033924_contig0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107751 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107690 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107628 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107567 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107506 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107445 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107384 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107323 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107262 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107201 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107140 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107079 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107018 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106956 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106853 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106792 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106731 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106670 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106609 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106548 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106487 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106426 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106365 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106304 29 96.6 0 A............................ | A [106277] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125438-123884 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVFK01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033924 CFSAN033924_contig0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125437 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125376 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125315 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125254 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125193 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125132 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125071 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125010 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124949 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124888 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124827 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124766 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124705 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124644 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124583 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124522 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124461 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124399 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124338 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124277 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124216 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124155 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124094 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124033 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123972 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123911 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //