Array 1 32593-29810 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCGZ01000011.1 Bifidobacterium pseudolongum subsp. globosum strain 1524B Contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 32592 29 89.7 32 A.........T...T.............. ACCTTAAAAGCCGGTGCGTCACTGAAGATTGC 32531 28 79.3 40 .......TT.......-......C..G.T CTTACTTTTTGCTGGAGTGATGTTCCCCCCGTTATACTTG A [32506] 32462 29 69.0 32 C.G..T..T...ATT.....AG....... CGCGGATACGGCGCCGCCCACGTTGCCCGAAG 32401 29 100.0 32 ............................. AGCGCCGACCGCACCACACTGCAGCGCTACGC 32340 29 100.0 32 ............................. TTGCCGCAGGCGGTCGCTTGGCACATGCCGCA 32279 29 100.0 32 ............................. TTGCCGCAGGCGGTCGCTTGGCACATGCCGCA 32218 29 100.0 32 ............................. TTGTTTTACTGTCTTTCGGGAGGTGGCTGCAA 32157 29 100.0 32 ............................. CGTTTTTCGGGCATCTGGATACCCAGATGCAA 32096 29 100.0 32 ............................. CCTCGCCGCCGTCCACCTGTGGGGGCGTGGGG 32035 29 100.0 32 ............................. TTATGGCAATCAGCGCAGAGGACGCGAAGAAA 31974 29 100.0 32 ............................. GTCACCGCCATCACCACCAAGGCGATGGACGA 31913 29 100.0 32 ............................. CGGGCGTTGTTTGAGGCACCTCGGGTCGGGAT 31852 29 100.0 32 ............................. AAACCGCCTCGTTACCGACATGCGAACCCGAC 31791 29 100.0 32 ............................. CATTGACCATTGCCGGCATACGGAGTCAAAGA 31730 29 100.0 32 ............................. TTCCTAACCTACCCTTACTCATATGTGGAAAT 31669 29 100.0 32 ............................. CTGCCGCAGTGTAAGGGGTTCGGGTCTCCCGC 31608 29 100.0 32 ............................. CATTGCACCTGTAGCTACAGGTGCCGTCCTCT 31547 29 100.0 32 ............................. ACACCGTGCGAACGAAGTCCACTAGATCATCG 31486 29 100.0 32 ............................. CAAAAAGCAGCGGATACGGGACCCGCTCCCAT 31425 29 100.0 32 ............................. CTGCGTCGCAGGAAACGAAGAAGGAGGCTCCA 31364 29 96.6 32 ............................C CGTCTGCGTCCTTGCCGAGCAGCTCATAGATG 31303 29 100.0 32 ............................. CGGCGAGCAGACGGTCATGTGATTCAGTGAAC 31242 29 100.0 32 ............................. CCAACAGCGGCCTGTTCATAAGTGCCTCCATA 31181 29 100.0 32 ............................. GCGCGCGCCACCTACATCGACCCCGCGCACCC 31120 29 100.0 32 ............................. CGCGGGCCCAATCTATGCTGACTTTGGCGGCG 31059 29 96.6 32 ............................A TAGTCTGGGTACGCGCCTAAAACTGCCGCCTC 30998 29 100.0 32 ............................. CTGAGCGCAACAATCGGGTTGCATGGATTCTT 30937 29 100.0 32 ............................. GAGCGTGGCAACGTGGTCGCCACGATCCCCAT 30876 29 96.6 33 ............................A GACGTTCGATGCCTCCGGTCAAGGGCAGCATGT 30814 29 100.0 32 ............................. GAAGCCAATATGAACATCCAGCTCAAAAGCAT 30753 29 100.0 32 ............................. TGGGACGAAATCCAAGAGACTACTAATAGCCC 30692 29 100.0 32 ............................. GCGCGGGCTCTCAAGAACAGTGTCATCGAAAC 30631 29 100.0 32 ............................. CAGGCCGAACGACTGCAGGACGCGCGCAGCCA 30570 29 96.6 32 ...............T............. AACCAGCCGATCACCGAGGCTGCCGTGCAGGG 30509 29 100.0 32 ............................. ATCATCGAACGCATTAGCCGGATACAGATCGT 30448 29 100.0 32 ............................. CGCAGGCACTCGTAGACGGGGCCGTTCGCTGG 30387 29 100.0 32 ............................. AAGGAAGAAGAACGCTTCACGAAAGAAGGAAA 30326 29 100.0 32 ............................. TCGCCAGTCAGGCGCAACCAACCAAGTCGCAC 30265 29 100.0 32 ............................. CACGTCCTCGCCGTCCGTAGTGACCGCTTCAG 30204 29 100.0 32 ............................. GCGGCGGAGGCGGCCAAGATCACCGACAGGCA 30143 29 100.0 32 ............................. TACTGCCGTTGGTCGCGGCTCTCGCCGGCCGG 30082 29 96.6 32 ............................A TCGTGGTACGCAACACTCTCACGGGTGAACGC 30021 29 96.6 32 ........T.................... CAGCCGGACGAGGAGATGGTCACCGTGAGTGT 29960 29 100.0 32 ............................. GGTTGTGAGCGACCAAGGCGATCAAGTCACGG 29899 29 100.0 32 ............................. GGCGCGCAAGGCCTCCAAGGTCTCAATGGCGA 29838 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ======================================== ================== 46 29 98.1 32 GTTTGCCCCGCATGCGCGGGGATGATCCG # Left flank : TCGCCTTCATGCCCACGGCCGAGGACGAATACGCATTCGACATGCCCGGTCAGGATCTCGCAGACTTGATTGAAGGATATCTAGGGGAAGAAACCCGCTTCCGTGATTCGTTCAAGGTTTATGCGCAGGGTGTCGAAACTGGTACTGCCATACTGCCGATGAGATGGGAAGACAGACTGGTGCGGTTGGGGGTTCCCGGACAGCAGACGCGTACGGAGATTTATTGTCTGGATCCCTATGACTTGTGTGCGGCGAAACTCACCCGCCTTGAGGAAAAGGACCGCCTGTATGTCGGTTCGTTAGTGGAGGCAGGTGACATTGATGTGGATAAGCTTCGCGAACGTGTCGCCATGATTCGTGATTCACGTTTCACGATTCCGCTGCGCGCGCAGGCGCAGGATTTCCTGAACGCATTCGCAATTGGGAAAACACATTGTTGAGAACCAGTGAAATATCGTATGCGATCCGTCGAAGTGGGCGAAGCAGGCCATACTCACCGC # Right flank : TATGCATGTTGATGAACGGAGGTGATTGACATGTGTGTCGCGGAGAAAATGACGTTTGAGAACCTTGTCGATTGGTATGTCAGACAACTCGTTCTTCATGGTGATGCGGAAAACGCGGAGATCATCAGGAATGCTTTTGCATGCGGTGAGCCGACAGTCGCCTTGGATATGGCCGTAATCCGGTCAAAACAGTTGAACATCATTCCCGAACGTTATATCATCAAGCGATCATGCGAGTTATTGGATCCCGATGATGATGGCATGGAGATTTGCAAGTGCTTTCTTACCGTGAACGGTTTGCCCCACATGCGAGAGGACAACTGTTGACGGGAGCGATATCATTATCGCATTCGGCAAAAAGAAACGCGCCGTCAGCATCTATCCACGGAATGAGGATTATCTATGCACAGAGGGACAACACCTGATGACCTGTTGCTGGAAAAGTTCGTGAAAATCCTTGAAGATCACAAACGGTACAAGGAAGCAGAACTGTTGGATGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTGCCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //