Array 1 45856-44500 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALQT01000015.1 Streptococcus agalactiae CCUG 39096 A ctg120001038484, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45855 36 100.0 30 .................................... TCGTAAAATGATAAGTAATACAATAACACT 45789 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 45723 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 45657 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 45591 36 100.0 30 .................................... ACGGCACTTTTAACCGTCTCTCCGCTTCTT 45525 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 45459 36 100.0 30 .................................... AACTAAACAAACGCATTGTGTTTTTAGCTT 45393 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 45327 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 45261 36 100.0 30 .................................... AAATTGCTCTATCAGTCAATAAAGCAAGAT 45195 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 45129 36 100.0 30 .................................... TGAATTCCACGCCACCAAGTAAACCTGTGA 45063 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 44997 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44931 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 44865 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 44799 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 44733 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 44667 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 44601 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 44535 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 125224-124466 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALQT01000013.1 Streptococcus agalactiae CCUG 39096 A ctg120001038482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 125223 32 100.0 33 ................................ CAACTATCAATGAAGAATCAATCGTTATTGCAC 125158 32 100.0 34 ................................ ATAGTCCCACATATTGCTATGAAAAAACGGAAAA 125092 32 100.0 35 ................................ TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC 125025 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 124959 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 124893 32 100.0 34 ................................ AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 124827 32 100.0 35 ................................ AGGTGGTATGTTTAAAATTTTTGCATCTTCAATTA 124760 32 100.0 34 ................................ GTCGTAAAGACGTAGCATATCACTAATTAGATCA 124694 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 124627 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 124561 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 124496 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 12 32 98.2 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAGG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //