Array 1 364669-364826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHF010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-038 tig00000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 364669 26 100.0 39 .......................... AAACTCAGCAATAGCTGATAGGAGGGTCAAAAAGTCTCG 364734 26 100.0 41 .......................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 364801 26 88.5 0 ...TT.G................... | ========== ====== ====== ====== ========================== ========================================= ================== 3 26 96.2 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 8.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 499817-497868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHF010000008.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-038 tig00016545, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 499816 36 100.0 30 .................................... AGCTTGTCAGATTCTGAGGCATTAACACCA 499750 36 100.0 30 .................................... TGTATCGAATGCTCTGTTTACTTTTTGTTT 499684 36 100.0 30 .................................... TATGAGTAGTAAAGAGATTGCGGATAATCT 499618 36 100.0 30 .................................... TATATAAGTTTGCACCAGAACCATTTGTCT 499552 36 100.0 30 .................................... AAATTGTTGCATTCCCCCACCCCCTTTCTG 499486 36 100.0 30 .................................... CTGTGGTCGAACTATGTCCCCTCAACACGT 499420 36 100.0 30 .................................... CCAAAGCTTTCGCCAATTTCTTCAGAGATG 499354 36 100.0 30 .................................... CTGACAAGTGTTCAGTCTGACAATGCAGCT 499288 36 100.0 30 .................................... CGGAAGTCTGTCGCAAACTCCCCCAGATAG 499222 36 100.0 29 .................................... ATCAACAGGTGTTTCTTCAATAACCTTTA 499157 36 100.0 30 .................................... TAATCAACGTGAGAACTGGCAATTAGCCCA 499091 36 100.0 30 .................................... TTGTCATCAAGATAGGTACTGGAATGTGCT 499025 36 100.0 30 .................................... TACGTTTGTTCTTGATACGTATGATAAGAT 498959 36 100.0 30 .................................... CTAAGGTGCTTGAAGCCGAGAAGCTAGCCA 498893 36 100.0 30 .................................... AAGTTATTTTTTACTGATATGTTGTATGGT 498827 36 100.0 30 .................................... ACATAATCCGTAGGGTTATTAGCTAAGTGT 498761 36 100.0 30 .................................... TCATTGTCGAAATAAGCTAACTCTACATTA 498695 36 100.0 30 .................................... CAAAAAACAACACACTTTACCTGCCACCAG 498629 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 498563 36 100.0 30 .................................... AGCTATCAGACAGTGGAAAGATGATGGTAA 498497 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 498431 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 498365 36 100.0 30 .................................... ACAAGTATCAGCTAGAAGAGCGGAAGAACT 498299 36 100.0 30 .................................... GTCAGTACCAAGCCTATGACGTGTTTACGG 498233 36 100.0 30 .................................... TATCAAAAATAGTTTGTAAATTATCAATAT 498167 36 97.2 30 ..................T................. ATGGCCGCATGCACTATACATTTACCGCAA 498101 36 97.2 30 ..................T................. TCGTTTCACATTCAAGTAAGTGTGCCCGAT 498035 36 97.2 30 ..................T................. TTTGCTAGGGCTTCCGCGTCCCATTTTTGT 497969 36 97.2 30 ..................T................. AGATGAGACGTGTAATGAATGGTTTGAACA 497903 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.2 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTATTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //