Array 1 31893-30165 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHZ01001014.1 Streptomyces sp. SID5789 SID5789.c1134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31892 29 93.1 32 ..................A.........T GCTGGCGTGGGCCACACCGCTGGCACGATCAA 31831 29 86.2 32 ..A.....T...........C....C... AGGCGGATGAAGGCGTTGATCGCCTCAATGGC 31770 29 100.0 32 ............................. GGGCAGGCCATCGGCTCCATCGGCGCCGTCGA 31709 29 100.0 32 ............................. GGGCCGTGCCCGCTGTCCCAGTCGATGTGCAC 31648 29 96.6 32 ........G.................... GATCTTGGGCCGGTCGAGCGACCCTCCGGTGT 31587 29 100.0 32 ............................. ATGACCACCGTGCCGGTGGCCCAGGCGGCGCC 31526 29 100.0 32 ............................. TCGGCGCTCGAAACCCAGTGCACGACCAGTGT 31465 29 100.0 32 ............................. ACCGGCGCGATCACGTACCCGACCTGCCACGG 31404 29 100.0 32 ............................. TGGACGGCGGCCGGCCCGTGCCGTCCCGAGCT 31343 29 100.0 32 ............................. CCGCCCGCGCCTGCCGCGAGGCTGAGGGTGCG 31282 29 100.0 32 ............................. GTGTCTGCGATGTCGTCGGCGCGCGGGCCCAT 31221 29 96.6 32 ......A...................... ACCGACCTCATGCCCGAAGACCGGCAGGACAT 31160 28 93.1 32 ..............-...........T.. GCCCTCGGTGCGGGTCGAGCGTCGCCCCGTCC 31100 29 93.1 32 .....T......T................ TGGATGTAGGCTTCGCCGCCGGTTCCAGGTTC 31039 29 93.1 32 ........A................C... CTGGCCGCGTCCGGCGGCTGGTGCGCCCCGTC 30978 29 100.0 32 ............................. TTCGACCGCGAGGGCGTTCCTCTGACCGGCTT 30917 29 100.0 32 ............................. CGCACGACGGACGCCTTGTCGTCGGCCTCGCG 30856 29 96.6 32 .........A................... GAGAGGCGCGTCTCAGACTCGCGCGGGGAGGC 30795 29 100.0 32 ............................. TGGACCGTCCCCACGCGCAGTGCGCAGTACGG 30734 29 100.0 32 ............................. TTGCCGTAGCCGGTCGAGGCGGGGGTGGACTT 30673 29 96.6 32 ..............T.............. CAGGTGAGCTACTCCGACGGTTCCGCCGTCAG 30612 29 96.6 32 .......................A..... GTCACGCGCGTGGTGGTGGTGACCGACCGGCC 30551 29 100.0 25 ............................. CCGTCGCCGGACGTCTCGAAGTAGA Deletion [30498] 30497 29 89.7 32 .C.T....T.................... TTCTCACCGATCACGGTGCCGCGGACGTTGTA 30436 29 96.6 32 ..............T.............. TCGACCTGTAGCACCGTGGTTTCGCTGTAGTC 30375 28 93.1 32 ........-................C... ATGGGCTCGCCGTTCCGCTCGGTGTTCGAGAA 30315 29 96.6 32 ........................A.... AACAATCAGACGTACAACCTGATGCCCTACAC 30254 29 96.6 32 .......................A..... GGACCGTCCGTCCGGCACTCCGGGCACCGCTC 30193 29 93.1 0 ...G......................G.. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 96.8 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCGCAAGCGGCCGCGTAGTGGCAGCGATCTCGGTCGTCCTGGACCATACGACCGCCACGGCGCTGTATGACCCGAAGGACCCGTTCAACGAGGCGGTCGCCGCCTTCTACGTCCAGGCCTCTGGTGGGCTCGGCGACCTGTACGCACCCGTGCTGTCACTGACAGCCGGCGATGCCGAGCGGCCTGGGCTGCTCGGCTACGTCAAAGGGCTGCGCTTCATCCGGATCGAGGCGTTCGACACCGATGCCGCGGTCACCGCCACCGAACTCCTGCGCTTCGGACACTCCTGGGCCGCCGTCCACGCCATTCATGCCGCGCGTCCCACCGCCGCCCACCCCACCGGACGTTTCCTGCTCACCCTGACTCCGAAGTCCTATGCCGGCACCGGCGTCCAAGCCGTCCATCCAGGTCAGTAAATCCGACACCACCACCCTGATTTGCACTTGTTGAGCACGGCGCTCGGACACGGGAAGAGCAGGTGGGGCAACTCCGCAGGAGGG # Right flank : GCCACGATCTCCCGGCAGGTACCTGCCGGTCCCTGCTCCCCGCCCCCGCTCCGTCTTCGGTCCAGTGGCCGACGTGGGGAGGCTGCGCCTCGTGCGGTACACGGCCGGCGTCTCCGTGACCGACCTCATCCGACGGTGTCACGCAGGGGGCCCTCGGCAGGGACGGCGGCCTCATGAACTCGTCGCGCTCCGTCCTGTGCTCATCGGTAGTTATCGTGCTCACCGCCCTCCGGTAAGTCGGCCCAGCGCGGGCAGGAGGCTGTCCCCTGGCCAGAGAGGTTGCTCGGTAGTGACAGCGGCCAGAAGTTCGCCGACGTCGTCTAACACCGCGGCGCGCTCTGCAGAGCCGTAGGTGACGCCAGCGTCGGTCGTCGTGTCAAAGACGCGGACCAGGCCGTGTGGTCCCGTGCACAGCAGGGCGCGCGTCAGCTCGGATAGGCCCAGGCGGAGGGCGTCGCACCGCTCTGTGTGAACGAGTTCCAGAAGGTCGAGGGTGACGC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33152-32711 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHZ01001014.1 Streptomyces sp. SID5789 SID5789.c1134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33151 29 96.6 32 .......T..................... GGGGCGCCTGGTCCCGGCGGGCCCTGTTCTCC 33090 29 96.6 32 .............T............... CTGTACGGGCCGAGCGGACAGACCTGCACCAT 33029 29 93.1 32 ..AT......................... ATCCGCGCCACGTGCTGGAGGATGGCCTCGCT 32968 29 93.1 32 ...T....................C.... TACCCGAGATACCTGGTCCACTCCGAAGCCCC 32907 29 100.0 18 ............................. CGCTCCGTAGCTCACGCG Deletion [32861] 32860 29 96.6 32 ............................G GCACGATCCTGGCGGGCCTCGCGGCGCTGCTG 32799 29 96.6 32 ........T.................... CCGCCGCCGGACCTGCCCAAGGTCTCCGTGCA 32738 28 93.1 0 ........................-...T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 95.7 30 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGGCACCACCCACTTCCCTGTCACCGCCCTCGCGGTGCTCCATGCGGCCCACGGTGATGCCGACGCCGCCAAGAACGTCGCCAACCAGATCCCAGAACCGCGGCTCCGCGCAGCCGCGTTGAGCGCGGTCGCCCGCTATTTCACCCGCTTCCCTGCCCGCCCCCTGCCAGGCACCGACCCCACCCGCACCGATCCGTTCACCCGCAGCATCCAGCACCTCGCGCTGACCGCGGCCCCCTCCGCCTCGGCAGACAGGAGAACGGCTGTCCAATTCCTCTCACAGGCGCTGAACACCTCCGGCTGGTACCACGGCCTGCCGGTACTGGCTGGGGTCGAACCAAGGGCGGTATCCCCCGTCCGGGACATCTTGCTCGTACATACCCGCGCCACACTGGAGCACCGACCTTCGAGGTGACGGCGAATATGCACGCCTATGACAGCCCGATGCGATCGGGCTCCCCGGGATGTGAGCAGTCGCGACACAGATCTGATCGGCGTT # Right flank : TACGTGACCGCGCATCGCCATCTCCTCTACCGACAGTAGAGGATGCGATAGAGTGAAGAAATGGCGGCAGACGAGACAAGTATCAAGGTGAGCGCAGCGGCGCGGGACAGGCTGGCGCAACTCGCAGCCGAGCATGGAACGACCATCCGTAGCCTGGTAGAGAACCTCGCGCAGGGGACTCCCACCCAGGCCGAATACGCCGAGCGGGCCGAACTGGCCCGCGCTGAGCTCATTTCTGCCCTCGGACACGCCCCAAGCCCGGAAGCCGAGGAGAAGGCCCGGGGGCTGCTGGAGCGCCTAGGCGGCGCTCACCATGGCTCGCAAGCGGCCGCGTAGTGGCAGCGATCTCGGTCGTCCTGGACCATACGACCGCCACGGCGCTGTATGACCCGAAGGACCCGTTCAACGAGGCGGTCGCCGCCTTCTACGTCCAGGCCTCTGGTGGGCTCGGCGACCTGTACGCACCCGTGCTGTCACTGACAGCCGGCGATGCCGAGCGG # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:-0.16, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 43183-44429 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHZ01001014.1 Streptomyces sp. SID5789 SID5789.c1134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 43183 29 100.0 33 ............................. GCCCCTCCTGGCATGCACGCTGCCTGTCGTGAG 43245 29 96.6 32 .................A........... GACGCCCAGCCATCGCGGTGGGCGTTCGTTCA 43306 29 100.0 29 ............................. GCTGCGACCGGCGGCGGCTGGGCCGCGAA 43364 29 100.0 32 ............................. GCCTGGACGCACGGAAGCGGCCCCGCCCTCCC C [43369] 43426 29 100.0 32 ............................. TGCTGGATCCGCGTGCGGACCGAGGGCGCGTT 43487 29 100.0 32 ............................. GCCATCACGGCAGTCTGCACCGCCTCGGCGGC 43548 29 96.6 31 ............T................ GCGGTGACGACGGCGGTACGGCCTCGGCCAC 43608 28 86.2 35 ...T........T..-..........T.. GGCGACCAGCTCAAGATGCGGCCCCCCCCCGCATA 43671 29 96.6 32 ............T................ AAGGCCACCGCGGCGGCCGGCCAGCTGGTCAA 43732 29 96.6 30 .....................G....... GAGGGGGCGCCCCCGGGGGCACAGCTCCCG 43791 29 100.0 32 ............................. AACCGGCGGCTGACTACGGCTTCTGGCGACCG 43852 29 100.0 32 ............................. TTGAAGTAGCGCAGGATCGGCGGCGGGGCTGA 43913 29 100.0 32 ............................. GTCAAGCGGGTCAACCTGACCGCCGGTCAGCC 43974 29 100.0 32 ............................. AAGCGGGCCCTGCGCCACCAGGCGCTCGAAGC 44035 29 100.0 32 ............................. GACCGCCGCATCGGCCCGTGGACGTACAAGGG 44096 29 100.0 32 ............................. AGCGGCAAGCCGTTGATGGACAGGAACATCCA 44157 29 100.0 32 ............................. GCTGTGACCTGGGCTTCCTCGATCCGCGGCCG 44218 29 100.0 32 ............................. ATGGGCTGGTGCACGAAGTACGGGGACTCGAA 44279 29 100.0 32 ............................. GTAGCGGTCTACTGGGTGCAGACCCCCCAGTG 44340 29 100.0 32 ............................. GCTCCGGTGCGCACGACCTCCGAGTACGGACC 44401 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 21 29 98.7 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GAGTGCTCCGCGTACGTCAGCCAAGGTGCATCGACCGCCTCTTTGTCCTTAACGGTTGCGTGCTGTGACGAGGCGTGACGCTAGCAAGCGGGCGGTGACCGTGTGAGGGTTTATGTGACATCAACTCGCCGTTCCGAAAAATGAGTTACGAGGCTCCGCTCGTCGTCCTGCGTCCTTCGCCGCACTGCAGGCCCGGCTTCTTATGGGGGCTTTCCCTCGCCTCCCGTACAGAGGTCTAGGTAGATCGCGACAGACCGGAAGGCCGCCGCGACGGCGGCACGACCCGCAGCACCTCCCACAGCGGTCGCGTCCCCGCTGCCCACCTGTCAGTGCTGTCCTGGCCGTGATCGGCGTCCGGCAAGGCCCTCGAGCGACGTTGAACAGCCTCCCGCACCATGACGGCCCCGTCGGCCGTTGCTGGGCGCATGCCCCATTTGCCGGAATCTCTGCACCTTACTGAAAACATGCCTCTGGGGTCGTAAACTTGCAGGTCAAGCAGT # Right flank : | # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10494-9491 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWHZ01000638.1 Streptomyces sp. SID5789 SID5789.c715, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10493 29 100.0 32 ............................. AAGCGGGCCCTGCGCCACCAGGCGCTCGAAGC 10432 29 100.0 32 ............................. GACCGCCGCATCGGCCCGTGGACGTACAAGGG 10371 29 100.0 32 ............................. AGCGGCAAGCCGTTGATGGACAGGAACATCCA 10310 29 100.0 32 ............................. GCTGTGACCTGGGCTTCCTCGATCCGCGGCCG 10249 29 100.0 32 ............................. ATGGGCTGGTGCACGAAGTACGGGGACTCGAA 10188 29 100.0 32 ............................. GTAGCGGTCTACTGGGTGCAGACCCCCCAGTG 10127 29 100.0 32 ............................. GCTCCGGTGCGCACGACCTCCGAGTACGGACC 10066 29 100.0 32 ............................. GCGCACAATCCGAACGCTGGCACCGGGGACAA 10005 29 100.0 32 ............................. GCCATGGAGACGGCCGTGGCCGCAATCGCGGG 9944 29 100.0 32 ............................. CCCGACGTCGTGTCCGCGCTCGGCAGGACGCG 9883 29 100.0 32 ............................. GGAGCCGCACGAGGGCCCACCACAAACCCTCA 9822 28 96.6 32 .....-....................... GCCGCGGTGAACCGGGCGGCGAACGCCAACTC 9762 29 96.6 32 ..........T.................. GCCACCACCGACCACGAAGCGCGTCTCAAGGT 9701 29 96.6 32 .........A................... GATCATGACCACCGTCGAGCGGGTGGCAGTGG 9640 29 96.6 32 .........................C... GCGGCGGGGATCATCACGGGCAGCCGGGACTC 9579 29 89.7 31 ...........G............CC... AACCCCGGCGTGTGGGTCATGTCCTAACCGG 9519 29 75.9 0 ...........C..T.......CC.G.TG | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.2 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : | # Right flank : CTAGGGCCGGCACGTTTCGCGGCCGATGGCTCAAAGCAGGGGCCTCCTGAAGATCGCTGACCTGACGTCCCACCTCGCGGGTATTCATAGCGGTATACTTTCGGCGTGGATACGACGATCAAGATCGGTGCGGAGACCCGCGACAAGCTCGCCGCTCTGGCCGAGGCCAGGAACATGTCGATGCGGGCGTTGATCGAGGAGTTCGCCGCGACCGCTCTCACTCCTGCGCAGTTGCGCGAGCGAGCCAAACGTACAGACGCGTTCTTGGCCGCAGAGTTTGGGCACCGGGTCAGCGACGACGAAGCCGGCGCATTGCGTGAGCGGATGCGACAGGCGCAGAACGCCGGGCATGCTCGGACTCGGGGCACGGCGGCGTGATTGTCGAGCACTACGTTCTGGACAGTCGCACACTCCTTGCCCTGGGGGGCAACAAGCAGGTCTCCGGGCTCATCCACGTTGCTGCGGGGGATCCCACGGTGCGTCTGTGGGTCCCCATCGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //