Array 1 56248-57291 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WCGP01000001.1 Lactobacillus helveticus strain IMAU30049 Scaffold1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	================================	=======================================	==================
     56248	    32	 100.0	    35	................................	TATCACAGAAAGCAACACTGCTACTTGGCATTCAA    	
     56315	    32	 100.0	    34	................................	ATCATATGAACCACGAAGCTGGCCAATGATAGCC     	
     56381	    32	 100.0	    34	................................	TAAGTGATTGTTGATACTCTCTCTGTTTACTGCC     	
     56447	    32	 100.0	    35	................................	TTTCAAAGTGAGACAGTTAGCTGCTGATCTTACAA    	
     56514	    32	 100.0	    39	................................	TCACACTTGGAGAAACTTCAATAGCAAGCTTATCCTCTG	
     56585	    32	 100.0	    39	................................	TCACACTTGGAGAAACTTCAATAGCAAGCTTATCCTCTG	
     56656	    32	 100.0	    39	................................	TCACTATGGACTCTGGTGATGTTTCCGAATAATCAAGCC	
     56727	    32	 100.0	    34	................................	TCACACCACTGGTTTAAGAACTTACTAGCTTGGG     	
     56793	    32	 100.0	    35	................................	TCTAATTTATGTAGGGGATAAGATTAAGCTTACTG    	
     56860	    32	 100.0	    36	................................	AGCATATGGAACGACAACCACGATACTTGTTAAGCC   	
     56928	    32	 100.0	    34	................................	AACCAAGCACGCCACCAAGCAGCCGGTGCAAAGT     	
     56994	    32	 100.0	    34	................................	AACCAAGCACGCCACCAAGCAGCCGGTGCAAAGT     	
     57060	    32	 100.0	    35	................................	CTTAGCAGACCCGTCTGCACTAGTACTTGCATTAC    	
     57127	    32	 100.0	    34	................................	CATTTGGTAGGGGCGTGTGGATAAATAGACAGCT     	
     57193	    32	 100.0	    35	................................	AAAAAAGCTAAAACCGTTTTAATAAATAAAGGAAA    	
     57260	    32	 100.0	     0	................................	|                                      	
==========	======	======	======	================================	=======================================	==================
        16	    32	 100.0	    36	GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT	                                       	       

# Left flank :   GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG
# Right flank :  TTTTAGGTCCATTGCGCTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT

# Questionable array : NO	 Score: 9.26
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,10] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.50,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.64,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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