Array 1 185349-185951 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZR01000004.1 Parapedobacter koreensis strain Jip14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================================================================================== ================== 185349 23 87.5 44 T...........-....T...... TAGTCCGAGCGCAACATCGTCACGAGCGGAGGGAGGCTACAGAT 185416 24 95.8 43 T....................... ACCTTTGTAGGCAGGGCTGGCACTCGCTTAGGTGTCACTGACC 185483 23 75.0 107 ..A-..C...G...G.....T... TCTAAATGATGAGAACGAAGAAGCTAACAAGTTGTTTCAGCCTCCGCTTTGAAGGTGTATACAAAAAATGATCTGCAAGCTTGTTAATATGTTTAGGTGTTACAGCC 185613 24 91.7 39 ..AG.................... CGTACTCTACGTAGTAGTCGATATTTGTGTTGTTACTGA 185676 24 91.7 31 ............AA.......... GTAGGTTGGTTCATAAATAAATGGTACAGAC T [185678] Deletion [185731] 185732 23 91.7 42 ..........G..-.......... CGATTTTTCATTTGGCAAACGGGGCGGTTCGGTGTTACTGAC 185797 24 100.0 42 ........................ TCAATCTCGTCTTTTCCCACTCGATTGAATGGTGTTACTGAC 185863 24 100.0 42 ........................ TGATAATGAAGCTGCGTGTCAATCTTCGAGGGTGTTACAGAC 185929 23 75.0 0 ...............G.-..TTTT | ========== ====== ====== ====== ======================== =========================================================================================================== ================== 9 24 89.8 49 CCCAATTTGAAAGGTATATACAAC # Left flank : GAAGAGGAGTTTTTGCTCCGCAATTGGAGCTATTACGGATTGAAGGAGAAGATTGCCTACAAGGCGAAGAAGGCAGGGATTAATGTGATTGAGGAGTAGCTAATTATAGGTATTAGCTATTAGCTAATAGGTTGTCGCAGCGAGCTAAAACCTAACTGCTAAAAGCTAAGGACTAAGAACTGTTCTTTGAAATCTTAGTAAAGTAAGTGGCTGAGCTATAATGGTGGCTGGCAAGGCGCGCGAAATGAGCAAAAGCGCAGTTTACTAAAGGTAAATGAGCATTTTGCGAATAAGCGCAACGCAGCCAGGTGCCATTAGAGACAGACACATAGAGGCTGCTTGTACAGCCGCAGGGTGAGGTCAGGATGACACTCACTGAATACTTTTTTCTGTTGCGGATTCGCGAATTCGCTTATTTGCTTGTGACGGTGGAACCAATTCAAGGTATAGCAACTAACCAAAAAGATTATGAAAGCGAACTCATCTGTTGTTTTACAGAC # Right flank : TGCCTTGACAGTAGTAAATAGCTTATTGCCGAAAGCCGGCAGCTGTAATGACCTATTTAATGAGAAACAAATATTTCCCAGTAATTTTGTATCTTTGTCTTAAAGGGTTAAGTCATGCAAACAATACTTGTTGAGTTAAAAAACCAAAAGGCCTACCGGCTCCTCAAAGAATTGGAGGATTTGCAGTTAATACGCCTTGTAAAAGTACCGACTAAATTGTCGGCTTTGCGCAAGCAAGTAAAGACCCCAATGGCCGAAACTGAAATTGACAAACAATTAACTGAATTGCGTAGTGAATGGCAGCGGGATATCTGATTGATACCTCTGCGGTAATCAAATACCTAAACGGAACTTTTCCAGAAACGGCGTTAAGGTTCCTAGATGGTGTTGTAGATGATGAGAGCTGTATTTCTTTTGTTTCGGAGATAGAACTTCAAGTGTGGACACCCCAAAACTCCGAAGACCTGTTAATCTACCAGCAATTTGTTGCTAATTCTGCT # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAATTTGAAAGGTATATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 10363-11184 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNZR01000013.1 Parapedobacter koreensis strain Jip14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 10363 30 100.0 36 .............................. TTTCTTTAGTGCTTTTTGAACATACTTTATACCCTC 10429 30 100.0 36 .............................. ACATAAATGTGATGTGTTTTTACTTCCATTGGCCGA 10495 30 100.0 37 .............................. TGTATTTTATTTAGTCGGCCTTTATAGTTGTCGAAAT 10562 30 100.0 35 .............................. TGAACTCCGTTGACTTATCCATTACGTCGCAGTAC 10627 30 100.0 35 .............................. GGCGTTTTTACGGCTATTCGTTGGTAAACGCCTAT 10692 30 100.0 37 .............................. ACTGGAGGCGGGGGGATATCCGTTGTTGAGGATAACT 10759 30 100.0 34 .............................. TGGTTACCTATACTGCCGGACATGATCGCCGTGG 10823 30 100.0 37 .............................. CGGAGGAGTCAAGCCCGCTGTTCACGGAGTAGTTGTT 10890 30 100.0 37 .............................. TCTTATTTGCCTCCAATTATTTTCCCCAACAATAAGC 10957 30 100.0 37 .............................. CATATGAGCCAAAAACAAGACAGGCTCATGTGGCTAA 11024 30 100.0 36 .............................. ATTAGGTACATGGCCTTTTGCATCTGATATTCGATG 11090 30 90.0 35 .A........C..................A TGTCTTTACGATTGTAAATATAAATGCGTTAGTGG 11155 30 76.7 0 .T.......AC..........C..C.G.C. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 97.4 36 CCTTTAATCGAACCATACAGGTATTGAAAT # Left flank : ATAAACCTTTTAAAGCGCGCTGGTAATGTATGTGATCCTAGTATATGACATAGGGGAAAAGCGTGTTGGAAAGATGCTTAAATTATGTAGGCGATACCTGCACTGGATACAAAATTCCGTGTTTGAGGGCGAAATTACTCCGGTAAAGCTAAAAGAGTTACTTGCGTTTGCCAAGGAAATTATGGACTTAGAAGATGATAGCATAATCGTATTCAAAAGTCGGGAGGAAAAGTGGCTGGATAAAGAAGTGATGGGCAAAGAACGGAATGAGCTGGGAAATTTTCTTTAACACGTCGTCGATGAAGACGAAAACGTAGGTTCTTTGACATCTTAGGCCTGACATGGTGCCGTAAATTCCGTTTAAAACTCCATTGAAGAGGGTTGTCGATCCCCAAGGGTTTTCGGCTTATTGACGGTCGACTAATGTCACGGCCAATTTCATAGGCAAAAGTTTCGCTATTCGGTCCAAAATAGGCATATTTGTATGCCGTTTATTACGG # Right flank : TTCCTATAACACTTGGCGTTATTAACATCCTGGTGCATCGCCCGAAACATTGCATATCCACCCGATATGCACATGTAAAGCACCACCTAAGCACATATAAAGCACGGTCATGAATTAGTGAATATCATACCTTATACGCGCTTTTTCCCGCCTTTCTTCTGCCGTAATGCGGGGTTTATCCGTAAGTAATGCGATACTGATCTTACTTTTTCCCGGATACACCCTGGATTAGCTCCGTATCACGCACGGGAGATGGCAGAAGAAAGGCAGAAGAAAGTGGCCAATTAATCCGGTTGATTTATCGTCAATTTGTCCTTAGCCAAATCTTCCCAACGGTAGTATTGGAATGTTTTATCATCGCTCATCGCTACAAAGAAGCCGTGTTTGAAATCGTTATTCAAGGGGATAGAAACAATATCCGAGCCGTCGCTCTCGCTGGTGGATGTGCGGATACTGGTGATGAGGGGGTGATCGTGTGGATTTCCCGCCGTTCCTTCCCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTAATCGAACCATACAGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //