Array 1 7760-5343 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSL01000028.1 Listeria monocytogenes strain BCW_2355 PROKKA_contig000028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7759 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7693 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7627 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7561 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7495 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7429 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7363 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7297 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7231 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7164 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7098 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7032 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6966 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6900 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6834 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6768 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6702 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6636 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6570 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6504 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6438 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6372 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6306 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6240 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6174 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6108 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6042 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5976 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5910 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5844 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5778 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5712 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5646 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5579 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5513 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5447 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5381 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5346,5349,5354] ========== ====== ====== ====== ==================================== =============================== ================== 37 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1173391-1172062 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSL01000029.1 Listeria monocytogenes strain BCW_2355 PROKKA_contig000029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1173390 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 1173324 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 1173259 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 1173195 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 1173129 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [1173120] 1173061 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 1172996 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 1172931 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 1172865 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 1172801 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 1172736 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 1172671 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 1172606 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 1172543 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 1172480 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 1172414 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 1172351 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 1172286 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1172220 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1172155 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1172091 29 93.1 0 .......................C....C | A [1172066] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //