Array 1 1-453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDQ010000294.1 Acidithiobacillus caldus strain MNG Contig294, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ TAACGGTGCAGTCTCCGGTGACTTCGGGAAGC 61 29 100.0 32 ............................. AGACTTCTGCGGCTGCACGGCTTGTTTCAGGC 122 29 100.0 32 ............................. CCGCGCTCGCATGGTTGATGCTGGGAGGTCCA 183 29 96.6 32 ............................A GGCAACGGGCAATGCGGGCCGGGTCTGCTCGC 244 29 100.0 32 ............................. AAATCACAGGGCTCGAAATCCTCAGTCAGTCC 305 29 100.0 32 ............................. TGTTGGACGAAGCCCAGAGCCGGGCCGTCGTC 366 29 100.0 32 ............................. TGATGCAACGGTATCAGATGGCGGCGCAGAGC 427 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 639-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDQ010000001.1 Acidithiobacillus caldus strain MNG Contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 638 29 100.0 32 ............................. CCAGCCAAGCGAAGCCAGCCAAGCGAAGCCAG 577 29 100.0 32 ............................. TTCGCGGGCGGTGACGTCCGTCTGATCATCCC 516 29 100.0 32 ............................. TATGCGAGCGAAGGGCAACTATTGAAAATAGC 455 29 100.0 32 ............................. TCGTCCAGGCCAATCATGGCGGCGACGTGGCA 394 29 100.0 32 ............................. GCTGAATAAGCATGTCTCAGCCGTCGCTCAAC 333 29 100.0 32 ............................. CTCATGATTACTGCATGGGCATTACCTTGCAA 272 29 100.0 32 ............................. CGTTCATCGCCTGGAGCTTGGGCCACTCGCCC 211 29 100.0 32 ............................. CTCGCCCTGCGTGAGATGGAGCGCCAGCTTGA 150 29 100.0 32 ............................. GTTGGGCGTTCTCCAATCTGGGCGTCAACGTC 89 29 100.0 32 ............................. GTATTTGCTCGCGGCAAGCGACTGGAGCCTGT 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-577 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDQ010000030.1 Acidithiobacillus caldus strain MNG Contig30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CTCTCAGACCTTCACACCGTAGAGCATTATAA 62 29 100.0 32 ............................. TAGACAACATCGGCCCAATATTCCGATTTGTC 123 29 100.0 32 ............................. TCGCAGACGATGATTTTGTGCCCCGGCGCGGG 184 29 100.0 32 ............................. GCCATTACTGCAGCGGAATCCGGTCAGACTGC 245 29 100.0 32 ............................. GCCGAGGAAGGCCCGGGTCTCGAGGTCACCAA 306 29 100.0 32 ............................. CCAGCCGATTTTATCGCCTCACCAATGGCAGC 367 29 100.0 32 ............................. ACCAGCCCCCGGCGGGCCGCCCGAATCTGCAC 428 29 100.0 32 ............................. ACTTCGCGCTGAGAGTCTGTCCGGACTTGGGG 489 29 100.0 32 ............................. GTAAAACGGTCGGCCAGCAGGTTGTATTTAGG 550 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 334-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDQ010000126.1 Acidithiobacillus caldus strain MNG Contig126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 333 28 96.6 32 -............................ TCTAAGCATAACGCGCCCCTGGATACATAGCC 273 29 100.0 32 ............................. AGCCATGGGGCTAGGGCCGCAAGTACGCCGAA 212 29 100.0 32 ............................. TCGAACGGCAGTAGCGCATCAACAACGGATTC 151 29 100.0 32 ............................. AGCCTGGGAGTCAGGTCGCCATCGCGAAAACC 90 29 100.0 32 ............................. GACGTATTGACTCGGATCATGAGCACGGCCCC 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : | # Right flank : G # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-212 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDQ010000389.1 Acidithiobacillus caldus strain MNG Contig389, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. ACCATTACTATTAGTACGGGTCTTGTAGAACA 62 29 100.0 32 ............................. TATTCCACCAAGGCGGCCGACGCGCTGGCGGG 123 29 100.0 32 ............................. GCCGCCGTAGCGGTGCAGTCGGCGGTTGGGAC 184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 35 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3917-4126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBDQ010000156.1 Acidithiobacillus caldus strain MNG Contig156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3917 28 100.0 33 ............................ GCTGGATGTACCAGCGCCGGGGCCGGTGCTGAC 3978 28 100.0 33 ............................ TTCCGCCTTCGCCTTGTCGATGGCGTGCAGGGC 4039 28 100.0 33 ............................ GAGGCCGATGTCTGGCTTTTGGCGAATGATCCG 4100 27 78.6 0 ..G.........TAC........-C... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 94.7 33 GTCTGCCCTGTGCGTGCAGGGATGGAAG # Left flank : CTTATCCTGGAGACCTCGTGTTCCCGCGTGCGCTGATCGATGCACGGGTTGGCCGGCAGTTTTCGTCTGCCATCCCGATTTATCGGGCGTTGTTGGGCTATCCGGGAGTGCGGGCCATCCGCACGGTGGTGGTGGAGTTGGGCACCAATGGGCCCGTAACACCGCAACAGGTAGCCGAATTCCTGCAGCTTGCAGGCCCCGGGAGAACGGTGGTGTTCATCGTGCCGCAAGTGCCGCGTCCGTGGGCGCGTGAAGTGCAGAGCCTGTATGCCACACTGCCGCAACAGTATCCCAATGTGCGCCTGGAATACTGGAACCGGCTGAGTTCCCTGCCGGACGGTCAGGAGAACATGGCGTATTTCTGGGGGGATGGCGTACACCCCAATTGGGCAGGGATACAGGTGCTGGTGAATGGTTTGCAGGCAGTTTTGGGTGGGTAAAAAATCGGTGGTTTGTGATAGTCTGAAAATCATTTTGTGAAACAGCGTGTTGTGAGAAGA # Right flank : GGCAGGATGCCTGACGAGACAATCCGCGCTATATTCGGGGCCGCTCCCAATCGAGACTTTTGACCAAAGGAGAACGCTAGTGAAAAACCAGATCCGCATCAAACCTGCCATTTCCATGGCCAACGCCATGAAAGCCTCCGCCCTTCTTGCTGTATCGGCGGCATTGCTCTCCGGCTGTTCGGCAATCGGCGGCAACGATTCCGCTTACCGTGCTGCCATGCAAACCTACCTGGAATCGGTAATGAAGTCTGATAATGGCTCTCCACAAACCGCTTTTTGCCTGAGCGTTTATAGCGGCGGCACTGGCACAGATTATTCCAGCGATTGCAACAGTGAAGTTGCAAAGGGATATAGTTTCGCCACTCCGGTATCGCAACTCAAAAACCAGAACTTGATAGCGCTGGAATCGGCTGGACTTATCCATATTGGCAAACAGTTTGACTGTGTTGTGAAAGGAATTGGATTTTTTGGGCCTGCACCTGTGTACCACTATCCTGTGA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGCCCTGTGCGTGCAGGGATGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //