Array 1 15-822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFMU010000079.1 Pseudomonas aeruginosa strain MRSN1680 MRSN1680_contig00079, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 ............................ ACGCCGAGGAAGCCAACGAAGCCGCCAGCGAA 75 28 100.0 32 ............................ AGCAACGTGGCCCAGCTCGCCAACTGATCGAG 135 28 100.0 32 ............................ ATGCGCACGCGGGCCTTGGTCAAAGCTCCCCC 195 28 100.0 32 ............................ GGCAAAACCACCCTCACAAACGGCATCATCGA 255 28 100.0 32 ............................ AGCAGTTAGGCGATGCACAGCCAAAGCTACTC 315 28 100.0 32 ............................ ATGACCTTTCGATGCTTGCGCGTCGGCTCGGC 375 28 100.0 32 ............................ TTCTCCGGGCGCGCCCTGGAGCCATCATTGCC 435 28 100.0 32 ............................ AACTTCCGGCCAGGCCGAGGGCGACACTTACA 495 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 555 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 615 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 675 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 735 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 795 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCAGGACCGAACCAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10987-9338 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFMU010000079.1 Pseudomonas aeruginosa strain MRSN1680 MRSN1680_contig00079, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10986 28 100.0 32 ............................ AAGCACACAACGACCAACCCAACCAGCGACCA 10926 28 100.0 32 ............................ TGACGGGGACAGTTCGGAGGGGTGGATAGAGG 10866 28 100.0 32 ............................ TTGGAAACAGGGCTGCTTTGGATGTACCCAAG 10806 28 100.0 32 ............................ TCTTCGCCGCGCTGGATTCGAAGGAGCGCCGC 10746 28 100.0 32 ............................ ATGTAGCCCAGCCCCAACGGCAGATCGCCAAC 10686 28 100.0 32 ............................ GATCACTCCCCGCTGCGCATGCAGCGTTCCCC 10626 28 100.0 32 ............................ TGAGAGATCGGGCGCTTTGGGATGTGACCAAC 10566 28 100.0 32 ............................ TGCTGGGCTTCTACAACCCGCGGGTGGTGCTG 10506 28 100.0 33 ............................ TTAAAGGTGCGTGATGGAATGGCTCGGCGCGAT 10445 28 100.0 32 ............................ TCGAAGAAATCACCATCAACGCGTAGGAGAAC 10385 28 100.0 32 ............................ GGTAGTACTGGCCGCGATCACGGTGCCGGACG 10325 28 100.0 32 ............................ AGCACTTCGGACTCCGACATGGCCGTGATGGA 10265 28 100.0 32 ............................ GAGGGGCCGTATCGACGGTGATTGATGCGACA 10205 28 100.0 32 ............................ AGCAAGGCATCCGGAAACGGGCCTTGGGTCAC 10145 28 100.0 32 ............................ ATCGCCGCCACCGTCGCCGCCATCACCATCCC 10085 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 10025 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 9965 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 9905 28 100.0 32 ............................ TAGAGGGCGACCTAGAGCTTGCGGCGCAACAC 9845 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 9785 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 9725 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 9665 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 9605 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 9545 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 9485 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCT 9425 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9365 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //