Array 1 95-1463 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEJT01000078.1 Siminovitchia fortis strain DE0390 NODE_78_length_14618_cov_58.749021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 95 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 161 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 226 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 292 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 360 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 425 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 492 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 559 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 627 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 694 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 761 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 827 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 893 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 960 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 1027 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 1094 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 1162 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 1229 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 1299 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 1366 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 1432 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : ATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGCCG # Right flank : AATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 87562-88323 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEJT01000007.1 Siminovitchia fortis strain DE0390 NODE_7_length_88379_cov_55.843528, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87562 36 86.1 30 .....T......T......C..G..........A.. TGGAATGCCTCTGGGGGATGTGATTCAGTC 87628 36 100.0 30 .................................... GAAAACCGAAGAAAACATGGACGGGGAAAG 87694 36 100.0 30 .................................... ATTATTAACGAATTAAAATCAAACAACCAA 87760 36 100.0 30 .................................... TTTTGTAGAATACGAGAATATCTTCATGCC 87826 36 100.0 30 .................................... ACTTCATCATGCGGTAAAACCCAAGCTCTA 87892 36 100.0 30 .................................... CCAGACGTTCCGGGAAATTGATAATTACGT 87958 36 100.0 30 .................................... TCGGAGATTTAACGTTAGCGCTCGTCTTAG 88024 36 100.0 30 .................................... TCGGAGATTTAACGTTAGCGCTCGTCTTAG 88090 36 100.0 30 .................................... GATTAATATTACGAATACAAACGAACTGAC 88156 36 100.0 30 .................................... GTATGGGTATTGAATTTGTAAATGAGTATA 88222 36 100.0 30 .................................... GATGATAAGAGATGAACGAAAAACTAGCAT 88288 36 86.1 0 ...............................CCTGG | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.7 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : CAAATCGCGCCCGGAAATTTTCTCACTGAAAACCTCATACATAAATTCATAAAACAGCCTGTCCGTTTTAAGGATAGCGTACAGTACGATCAATTTACTTGTATGTATGTCAGTAGTTAAAAGCTTCCTAATGAGGTAATCATCCAGCACTTTTAAACGTGCCTTTATGGCTGAAGCAATTTCTCTTTTGCGGGTTTCAGTTTTGACTTGAAAGATATTTTGGCTGATAACTTTCTCTTTCAATTCGAGTTCATTCAACCCCTTCAAATGCAGTTCTGCCAGCATTTTGGTCTCCTTGTATAAGAAGGGTCGTGACTTGATGGTAGAGCTGTACTTTAATCCTTTTTCCATATTATCCCTTTCTCATGGTCCAGTATTTAGTTCCATTTTATCATTAAAATGTGCGCTGGCGGAACGGTTTTTTTGACAGTTTTAGCAGTTACTGAAGGGGCAAGCTTACCTCCAAGAAAAAAGAGATGAAACTCCAATTGACAGTTATC # Right flank : ATTACGAAAGTAAAATCTAGTTATTAAATACAAAAAGGGCTCCAGCCTTTGGTATA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 18241-15039 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEJT01000072.1 Siminovitchia fortis strain DE0390 NODE_72_length_18341_cov_51.454918, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18240 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 18174 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 18108 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 18042 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 17976 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 17910 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 17844 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 17778 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 17712 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 17646 36 100.0 30 .................................... CGTAACAAAACACGCTTCTGTTACATTCGA 17580 36 100.0 30 .................................... AGCCGAAAGCCGAATAAGGCTTTTTTATTT 17514 36 100.0 30 .................................... TGTAATGAGGCCGATCAGGCATCACTTCCT 17448 36 100.0 29 .................................... TAAAGGTTCGAGGAAACATACTCGCCAAT 17383 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 17317 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 17251 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 17185 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 17119 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 17053 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 16987 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 16921 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 16855 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 16789 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 16723 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 16657 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 16591 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 16525 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 16459 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 16393 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 16327 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 16261 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 16195 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 16129 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 16063 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 15997 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 15931 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 15865 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 15799 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 15733 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 15667 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 15601 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 15535 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 15469 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 15403 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 15337 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 15271 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 15205 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 15139 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 15074 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 49 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATT # Right flank : ACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 6154-8654 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEJT01000092.1 Siminovitchia fortis strain DE0390 NODE_92_length_8727_cov_51.972992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 6154 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 6219 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 6286 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 6353 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 6420 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 6487 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 6554 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 6622 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 6693 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 6761 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 6828 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 6896 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 6962 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 7028 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 7095 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 7161 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 7227 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 7294 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 7360 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 7425 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 7492 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 7558 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 7624 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 7692 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 7759 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 7827 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 7894 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 7960 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 8028 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 8094 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 8159 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 8225 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 8291 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 8357 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 8424 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 8491 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 8557 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 8623 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 104-931 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEJT01000150.1 Siminovitchia fortis strain DE0390 NODE_150_length_991_cov_43.064655, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 104 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 170 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 236 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 302 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 368 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 434 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 500 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 566 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 632 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 698 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 764 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 830 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 896 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : ATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCAAG # Right flank : AAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 104-602 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEJT01000164.1 Siminovitchia fortis strain DE0390 NODE_164_length_661_cov_43.043478, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 104 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 170 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 236 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 302 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 369 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 435 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 501 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 567 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCACG # Right flank : AAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //