Array 1 470448-472183 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEW01000001.1 Salmonella enterica strain BCW_2209 NODE_1_length_599044_cov_4.7908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 470448 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 470509 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 470570 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 470631 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 470692 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 470753 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 470814 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 470875 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 470936 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 470997 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 471058 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 471119 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 471180 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 471241 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 471302 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 471363 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 471424 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 471485 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 471546 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 471607 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 471668 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 471729 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 471790 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 471851 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 471912 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 471973 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 472034 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 472095 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 472156 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 488865-490604 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEW01000001.1 Salmonella enterica strain BCW_2209 NODE_1_length_599044_cov_4.7908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 488865 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 488926 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 488987 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 489048 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 489109 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 489170 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 489231 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 489292 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 489353 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 489414 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 489475 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 489536 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 489597 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 489658 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 489719 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 489780 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 489841 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 489902 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 489964 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 490026 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 490087 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 490148 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 490209 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 490270 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 490331 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 490392 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 490453 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 490514 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 490575 29 100.0 0 ............................. | A [490602] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //