Array 1 35437-37208 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDK01000001.1 Providencia rettgeri strain AFE652_S1 38_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35437 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 35497 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 35558 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 35619 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 35679 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 35740 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 35800 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 35860 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 35920 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 35980 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 36040 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 36100 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 36160 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 36221 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 36281 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 36341 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 36401 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 36461 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 36521 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 36581 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 36641 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 36701 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 36761 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 36821 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 36881 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 36941 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 37001 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 37061 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 37121 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 37181 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45846-46836 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDK01000001.1 Providencia rettgeri strain AFE652_S1 38_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45846 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 45906 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 45967 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 46027 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 46087 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 46147 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 46207 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 46267 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 46327 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 46387 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 46448 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 46508 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 46568 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 46628 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 46688 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 46748 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 46808 28 89.3 0 ...T......A.........T....... | G [46834] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //