Array 1 2932508-2930647 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIR01000027.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01578 2015LSAL01578_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2932507 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 2932446 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 2932384 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 2932323 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 2932262 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 2932201 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 2932140 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 2932079 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 2932018 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 2931957 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 2931896 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 2931835 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 2931774 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 2931713 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 2931652 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 2931591 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 2931530 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 2931469 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 2931408 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 2931347 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 2931286 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 2931225 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 2931164 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 2931103 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 2931042 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 2930981 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 2930920 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 2930859 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 2930798 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 2930737 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2930676 29 93.1 0 A...........T................ | A [2930649] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2949969-2949148 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCIR01000027.1 Salmonella enterica subsp. enterica serovar Derby strain 2015LSAL01578 2015LSAL01578_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2949968 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 2949907 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 2949846 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 2949785 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 2949724 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 2949663 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 2949602 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 2949541 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 2949480 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 2949419 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 2949358 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 2949297 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 2949236 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 2949175 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //