Array 1 149437-151081 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014862.1 Thermococcus profundus strain DT 5432 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 149437 30 100.0 36 .............................. TGAGGAATTGTGGGTAGTTGTAAACGGCGTAGCTTT 149503 30 100.0 40 .............................. TCTTAAGCTTCCCAGAGTCGTTAGTGAACTTTATGTTTAC 149573 30 100.0 39 .............................. TCTTAAAGAGAACTACGCTCTCGCCCTCGAATTCTTTAC 149642 30 100.0 35 .............................. TCATGTTCACGAAGTTGTAAGCGTGCCTACTAACA 149707 30 100.0 37 .............................. CGAGCCATCTCTTTTCAATGCCCCTATCTTCGACACC 149774 30 100.0 40 .............................. TGAAGCCTGTATTTCCGAGGAAGCTCCTTTCTAATGGCCA 149844 30 100.0 38 .............................. AAGCGTTTCCGAGGGTTATGGATTTTGCTACTGTCTTA 149912 30 100.0 37 .............................. TTACCGGGTCGTCGGCCCTCCCCTCGGCATTCTTCAA 149979 30 100.0 38 .............................. TCATGCTCCCGGAGGAGTATTAGAGGTGATGAAAATGA 150047 30 100.0 35 .............................. GCAGAGGGTAGACGGTAGAAATACAGAGCTTAGTA 150112 30 100.0 39 .............................. CTTTTGCTTAGCCCTCTTCCGCTGCTTCTTTCCTTTCTG 150181 30 100.0 39 .............................. CTTTTGCTTAGCCCTCTTCCGCTGCTTCTTTCCTTTCTG 150250 30 100.0 37 .............................. ACTCCTCTTTTTCCGATGTAGCAAATACGCGATTATC 150317 30 100.0 35 .............................. TTATCAGCCACAAGAACGCGAAAAAGAACACTCCC 150382 30 100.0 36 .............................. CCAGTTCCTCCATCTTCTTCCTGACAACCTCCACCT 150448 30 100.0 36 .............................. GTCGCGTGGGAACTCGACGACTTGCGTGTTTCTATC 150514 30 100.0 36 .............................. ATTGCGAGGCCGACCGTGCTGGTTATTGGGATCTCG 150580 30 100.0 37 .............................. TCCTGTCGGCAGTTTCCAGCCCGAAGCGCTCCGCTAT 150647 30 100.0 37 .............................. ATTGTAGTGAGCGCATTGATCTTCTTCGGGACCTTGT 150714 30 100.0 38 .............................. CAAGGATGGGGCAGAATGAGCACAGGGACAAAAGACTT 150782 30 100.0 37 .............................. ATTGTAGTGAGCGCATTGATCTTCTTCGGGACCTTGT 150849 30 100.0 38 .............................. TGACCTTGTAATAAACCACGTCGCCGAATTTGCTCGGA 150917 30 100.0 38 .............................. TCGGACTCTTCATCATAGTCGGCATGGTGGCCTTCGGC 150985 30 100.0 37 .............................. CTTTCTCAGCCTCAAGAGCCTTCAGTGTCGCCGTTTT 151052 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AACTAACCGTTATTTGGGCTTGTTTTTGTTTGTATCACGTTTTAAGAGGTTTTAATTGCTTTTTTTGGACTTTGTGGTCCCTTAATATACAAAAGACGTGTTTTGTCGGATTTTGAAGTCTAAAGTAACCCCGAGTTATTTTGTATTATTTGTTACGTTTTTAAGAATTCATTGTAACGAAAATTTTTCGAAAAAACGGACAAAGCATGCAACGAGCTAGAAATCATAAGTATCCCGTGGAAAACGTTCTTTTTCTGCTTTTGTCTATTCATAATCGAGTTTTCTCCGTTTAAATTCCTCTATTTTCTCTGGGAGTCTTGTGGACATTTGTGTTCATGCTCTTAAAGGGGAAATGAAATTTTTGATATCTCTGCTTTTGCCTCTGAGAGGGTTGCAAATCAGGGCGGCTCTGGGCCCTTTTGAGGCCCCTTTGGGAAAAGGCTTATAAAATTGGGGACCTCTTATTATTTCATCTGGCAAAAGAAGGAAAAATCTGCCCT # Right flank : GACGTCTTTCGCGCCCTTTTTGAGGCCGCGCTTATAAGGTTGCAATAAATTAGACATGAAAAATAGAGGCCAATTGTGGGTTAAGGGTGGGATCTGGAGTTCTGCTTTTCTTGATGACATGGGAGGGGCGGGGGGGTCCCCTGAAAACCTTTTTAACTTCCACCGGAAACAAAGCTTTTCAAAGGGGTTAAGGTGGTGCTCATGAGCATTCTCATCAAAAACGGCCTGGTTGTCTACGGCGAGGATCTAAACGTGGTTAATGCGGATGTCCTCATAGAGGGCAACAGGATAGCCAAAGTGGCGAAGAACATCAGGGAGGGCGCCGACACGGTGATCGACGCGAGCGGCAGGGTGGTTTCTCCCGGCTTCGTGAACCTCCACACGCACTCTCCGATGGGCCTTCTTCGCGGTCTTGCCGACGACCTGCCCCTTATGGAGTGGCTTGAGAAGCACATCTGGCCTAGAGAAGCTAAACTGACGAGGGAAGCCATTAAGGCCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 522704-523627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014862.1 Thermococcus profundus strain DT 5432 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================== ================== 522704 30 100.0 37 .............................. TACGGAACATGGAGGACATTCAAATCTTCATAAAGAG 522771 30 100.0 37 .............................. CTGTAAAAGGGCCTGAGCAAAAATCAAGGCCCCATAA 522838 30 100.0 38 .............................. CCTGGTGGCCTGCAATGGAAGAAGCTACGCGATGGTTT 522906 30 100.0 50 .............................. TTGGAAGCGTTCCACTACCTCTATTCCCGGCCATTGCCATGTTGCAATAA 522986 30 100.0 49 .............................. TCCTCAAGGGCCTCAAGAACGTCCTCCGAGGCTTCCCTTATCTTCTCAA 523065 30 100.0 38 .............................. TGAACGCCTTCGCATAGGGGTTGATCGGTGTGATTCCC 523133 30 100.0 35 .............................. ATGATGACAAGAGTAACAAGAGCAAGCAAACCCAC 523198 30 100.0 36 .............................. CAAATAAACGACAACTACGCCCTCATTGAGCTCCAG 523264 30 100.0 37 .............................. TGATTAGTGACATTGGGAGTTTGTAGAGGTACTGTGT 523331 30 100.0 37 .............................. AATTGGGGGAAGCTCCGGGCTCCGTTGGTGTTCGTTT 523398 30 100.0 36 .............................. CCGCCGCTCTAAGAACTACTTCGCGCGCCTGGTCGG 523464 30 96.7 36 .............................G CAAGCTCAAGGCGCACGGTTATTCTCTCAAGGTCAA 523530 30 93.3 38 ...T.........................G AAGCTTAACTAAATGTCCCTGGTCCAACATCTCAATAA 523598 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================== ================== 14 30 99.3 39 GTTGCAATAAGACTCTAGGAGAATTGAAAC # Left flank : TCTGGAAGCTCAGAGAGCTGGGTTTTAGAGTCTTATCAAAATGAGGGAGCCTTGATCCTAAATATCTCCTTCTATTTTGCTTTTTCTGGCAGTCATGGGATTTTTGTGGATCCGGGACTCTTTAGTAACTTGTTGTTATTATCAAACAGGTGGTTACAGATATCTGGTGATCTTGTGACGAAATTTTTTCGAAATTTTGAGAGGGGATTTGTACTGGTTTTTTGATACCCCTCCCACTGCAAATCGAGGATTTTGGCATAAAAGGGCATGAAAAGGGACTAATTTGTATTTGGACCCTTAACACCGTCCGGGAAGTCTCATGTTCAAGAGAGTGCATGATTCTGGGGAGGTGATTAGAATGGATTATCCAATGTGAAGTCCCTTTAGAGTCCTTGAATTGGGAGCTTCTGGGGGCTCTTTGAAGTACCCTTTGCGGAAAAGCTTATAAGATTGGAGCGCTCTCATCAGTTTAGGGGGCAAAAGAAGGAAAAATCCGCCCT # Right flank : CTATAAAGGAAGAAGGCATTGAGGGTGAGTTTGCCGCCCTTCTTCTTGGGGGGTTTCATTTAAAGAAGATCCCCGAAAAGCAGATCCTCTTTCCTCCCCCCTGCCTTGAGGAAGATCTTCTCGCTCCAGCCGACGTCTCCGACTCTTCGAGGTGTGTGGGCGTCGCTGGCGAAGGTCAGCTTTATGCCCCTCCTCACGCACTCCTTAACGAACTCCAGATCCGGGACTCTATAGCGCGAGCTTATCTCAAAGGCCTTTCCGTTGGCCTCCGCCAGCTCGAGTATTTCCTTAAGCTCCTCGTTGCTGGGAAAGCCAATGTGCGGAAAGTTTGCCCCGAAGTGGCCGATTACGTCAACGTTCTCGTCCATCAGGGCCGCCTTGACGAGTTCTACGTATTCCCCCGGCTCATCGAGCCACTCGTGGACGCTGGCTATCACGTAGTCTAGCTTCTCCACCATCCAGTCCGGTACGTCAGTTCCGCCGGGGACGATGTTTCCCTC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 1106802-1104751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014862.1 Thermococcus profundus strain DT 5432 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1106801 30 100.0 36 .............................. TTGGTTCAGCCTTCTCCGTCCCTTTTAGGGGCTTCT 1106735 30 100.0 36 .............................. GGAGTATGCAACTATTTATGAAGCCTGCACCCTCAA 1106669 30 100.0 36 .............................. CTTTAAAGGAGGGTGGAAAATGGAAACGGTGGGAGG 1106603 30 100.0 41 .............................. ATGCAGTAAGGGACGTGATTAGAAACTACTTTGACGGTCAA 1106532 30 100.0 36 .............................. ATGAAGTTGAAGCCACCGCAATCGTCCAAACGAAAG 1106466 30 100.0 39 .............................. GACTGTCAAGATACCTAGCTCCCTCCAGATCACCGTTGT 1106397 30 100.0 37 .............................. AAGGCTCGAAGGCCTCCTTATACCTCACGTAGAATTC 1106330 30 100.0 37 .............................. CCGGGTCCGGCTCCCAACCCGCCGCCCTAAGCTTCTT 1106263 30 100.0 39 .............................. GAGATTATAAGAGCATTCGAAGAAGGAGAGGGCCTCGGA 1106194 30 100.0 40 .............................. TGAGCGTCACGGTTGAGCCGGTCAATGAGAGCAGCATGAG 1106124 30 100.0 38 .............................. ACGCCGACATCGGAGGAAAAGAGGCCCTTAACCTCAAA 1106056 30 100.0 38 .............................. GAGCAACCTCCCAGAGGAGTACACCCACCCTGATCTGG 1105988 30 100.0 38 .............................. TCTGTTTGAGCTGCCGCGCCGCCTGAATCTTCTCCTCT 1105920 30 100.0 38 .............................. GTATTGCCGTCACTACAAGCCGGAAGCTCCACTTTGAA 1105852 30 100.0 37 .............................. AAAGGCTAGCCCTCACTCGCCGCTTGAGAAATGTCCG 1105785 30 100.0 35 .............................. TTTTTGACTGGGAGTGTAGGTATTGTCCAGTTAGG 1105720 30 100.0 38 .............................. TTAGCTGGGTACCTGGCAGTGTTGCCGCTCAGGTCATA 1105652 30 100.0 38 .............................. ATACTTTCTGGTTGGCAGTAAAGCAGATGAAAAGAAAG 1105584 30 100.0 37 .............................. GCCTCCGTAGTTGGGGACGACGAGTAGGGCGGGGGCT T [1105569] 1105516 30 100.0 37 .............................. ATCGTACACCTCAAGGAACGGGAAGACGGAAAAATCA 1105449 30 100.0 39 .............................. TCTTATCAAGCTCGTCGATAGCACACACTCCACCATCAG 1105380 30 100.0 38 .............................. AATCAATAATATTGCCTTTCGGAAACTCTGAGAGGTCA 1105312 30 100.0 36 .............................. GTCTCTTAGCGGTGATCCTCGGGTGAGGGAGCTATG 1105246 30 100.0 36 .............................. TAAAAGTTTGGCTGTTCAGGATCCCCTAATTTGCAG 1105180 30 100.0 38 .............................. TACTCTGTCCCCATGAGCTCCCACGCCTCGGCGAGCTT 1105112 30 100.0 38 .............................. GGAGTAGCTGACCTCCGAGGCCCCCACTAGTGCAGGCC 1105044 30 100.0 36 .............................. ATATGAGCTTCCCCGGACATTCTTAAAAGAGTTATT 1104978 30 100.0 37 .............................. CAAAATGGCCGAACAGATCGTCGAGTACATCAAAAAG 1104911 30 100.0 35 .............................. AAAGACAAAAAGAGGGTTAAAAAGAAGGGTGACGG 1104846 30 100.0 36 .............................. CTTAAGCAGGTGGTTTTAGTAACTGAGGACGGGCAC 1104780 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 31 30 100.0 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TAACGGCCCGACTGTTTTATAGTTTTGGCCGTATCACGTTTAAAGCATCCTGTTGTTCAAAGCGGGTTTTATTAACAAATTAATTTGGAAGATATCAGCTGATTGGTTCCTGGAAGTCTTTAGTAACCTGTTGTTATTATCAACCAAATAGTTATGAATATTTAGGATTTTGTGACGAAATTTTTTCAAAATTTTGAAGTGAGGGGTGTGATGCCTTCTTTAGTACCTCTTCCTCGTGCAAATCGAATATTTTGGCATAAAAAAGCATGAGAACAGACCAATTAATGTTTGAGCCCCTAAAAATGCCCGGGAGATCTTATGTTCACAGTTGTGCATAACAGCATAACGAGATCAAGAGCTAAGATCCGCAAGTAAACTCTCCTCTTGGTTCCTAAATTGGGGGTTTCTAGGGGCTCGTTAAAGCGCCCTTTGCGGAAAAGCTTATAAGATTGGAACGCTCTCATCAGTTTAGGGAGGCAAAAGAAGGAAAAATCTGCCCT # Right flank : CTTCCCGATGACTGCGTCAACACGGGCCCAGGATCCCTGGTTACAATAAGACCTAGATAGACAAAATTTAGAAAAGGCTCCACTAAAGGTCCAACACCTTCCCCGCGTGGAGCTTTTCGAAGTTCTCCCCGAACTCACTGGCAAAGAGAGCCTCAGCTTTAAGGCCCGTGCAGTGGCCGGCGTAGACCTTCTTAACTCCCATCCCCTTCAGAGCCTCCACGGTCTTTTGAATCCTCTCATCGTCAGCGTCTATCAAGTGAAAACCGCCAACAACTGCATGAACGCGCTCAACTCCGCTTATCTCCCTTGCCCGCCTCACCATACTCACAATGCCGGGATGGGAACAGCCCCCAACCACGACAAGCCCCTTTCTGGTGTTTATCGCAAGCCCTATCTCATCGCTTACGTCGTCCTTAGTCACCCTTCCATCTTCAAGTTTGTAGAGCCCTATCGAGGTCTCCTTTTCGAAGTCGGCCCTCTGCTCAACCGGAACCTCCCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //