Array 1 3765-3976 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHRA01000146.1 Leptospira borgpetersenii serovar Javanica str. L0864 contig_146, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3765 29 100.0 32 ............................. AGACCGAAGGCACAAAAAGAACCAATAACTTC 3826 29 100.0 32 ............................. TCCGTATTTTGTTGGATTATCTGTGATGAAAG 3887 29 100.0 32 ............................. TCGTCTGAATGTATCTTTACGAGCATCTCTGC 3948 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TATCCCGAATAATTGCGACCTCTTGTTCGTTCGATGTGTCAATGTGATTCTTAGCCCGGTTCCGCATTTTTCAATGAAAATTGATTTATAGATAGGAAAGACACTCAATAGTTTATCGTAGAATGGAGAATTTTTTATATTTCAAAACGACAGTTCCCTTGGAGTACAACTCTGGTGAAATATTTTAGACAATCCTCTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCACCTTACTTTTACTCTTTCTAATTTTGTTTTTAGTTACTTTCCTTTTTTCAGCAGAAAAAAGTAAGCGTACCTTAGATGTTAACACAGTGGCAATTTTCAAACACAGGGTTCCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGAGATTTGCCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : GTTTCAGAGGCAAGGATCTTTCCATAACGTTACCCACAAATTAAGAAGGCTTTTGGGATCATAAGGATCAAAAACTGATATTTTTCAAGTGTTCCGACAAGAATGAGGCTTTTTACTTGCAAGAAGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27537-27884 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHRA01000111.1 Leptospira borgpetersenii serovar Javanica str. L0864 contig_111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================= ================== 27537 29 100.0 32 ............................. CCTTTTGAAACGTACAAAGTTAACTTTTTGGA 27598 29 100.0 32 ............................. TGGCCATAGTTGTCACGGCTTTTGCCCGAGTC 27659 29 100.0 32 ............................. GCAACTCGCGCAATCATCGGAGCATTTCCAGA 27720 29 100.0 33 ............................. TTTTGTGCGAGATGGGAACCGGCGAGTGTTGCG 27782 29 96.6 45 ..T.......................... TTATCGTTATACGAAATTCCACTCACTTCAAGATCACCTGATTTC 27856 29 93.1 0 ..T.........................C | ========== ====== ====== ====== ============================= ============================================= ================== 6 29 98.3 35 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAACGAATTATTCCCGATATCAAGGAGTTGATCTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAATTGAAGCCGGGCGTTTTTGTAGCTTCCATTAATGCGAGAGTTCGAGATCGAATCTGGAAAAAAATTTCCGAAGAATGGAAATCCGACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCTCACGGCGATCCTTCCCGCGAGATTATGGATTTCGACGGTTTACTTCTCATGTCCAAACCCGATCCGAAACGTGATCAGATAGAAGTCATGAATGATTCCGATTTTTCTATAACCACCGAAGACGAAGTTTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAAACCGCCTTCTTTTAGAAGCAGATGTTCCTGATGAATCTTAGGATCAGACATAATTCTGAAGATTCCTATACAAACTTTTAGC # Right flank : CGAAAAAATAAAGGAACAGAACAAACGTAGGGCGCGTCCAAAACCAAATTCTGCTTTATCAGAAAGATCATTTCTTCAAAGATTTCTGGAGTCGTTTTAAACTTTGATATAGATTTTCCTTTTATCTAAGAAACTTAAAATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAATAACGATGCAAGATACGGATCTGCAAATAAAACAAGTTTAGAAAAAAACCAAACTTTGACACCGACCGATTTTCCATTCTCCAACACGATCGTCCAAAAATTGAGAGTTCTCGCAAGAATTCCGGAACCTACAAAGACTAAAATCGCATTTTTACCGAATACAAAAAACGGTTGAAAAAAGATTTTCAAATCCAAACCGTTCCACTTTTTCAAAAGAATTAAAGAATCTAAATATTCAAAAAATCCTATACACAAAAAAGAGAGCCCTGTCGTATATACCGCGTAACTTCCGGTCCAAAGGCTTTTATTCATCGGTAAACTTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //