Array 1 395-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALOX01000139.1 Roseomonas sp. B5 contig143, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 394 29 100.0 32 ............................. ACCCGCGTGGATGCCGCCGAGGTGATCCACCT 333 29 100.0 32 ............................. CTCATCAGCTCGGCCTCGAAATCGGCGCGCCA 272 29 100.0 32 ............................. TGCTCCCCCGTGCTCTCGAATTCGGCCACGGA 211 29 100.0 32 ............................. ACAGCCGAGCTACGCAAGCACGACAGGGATTT 150 29 100.0 32 ............................. CAGGTCCCCTCCGGATCAGGGCCGTGTGGAGC 89 29 100.0 32 ............................. AACCCCACGGCCGGTCCCCCCGGCTGTCATCG 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : GTGCTGGGAAAGCTGATCCCTCTCATCGAAGAGGTTCTTGCAGCCGGAGGCCTGCCACTGCCGGCCGCACCCGAGGAAGCGATGCCCGTGGCTTTTGAAGCTCCGCCGGGATTGGGTGATGCTGGTCATCGTGGTTGAAAACGCGCCGCCGCGCCTGCGGGGAAGGCTGGCGGTCTGGCTCTTGGAGATCCGGGCCGGGGTCTATGTCGGCACCTATGGCCGACGTGTGCGGGAAATGATCTGGGAGCAGGTGCAGGCGGGGATCGAGGAGGGCAACGCCGTCATGGCCTGGGCCGCCCCAACCGATGCTGGTTTCCTGTTCGAGACCTGTGGACGAAATCGGCGTGTGCCGACCGACATGGACGGGTTCCGGCTGGTCGCCTTTGGCCCGGAAGCGGCATACTCTGCCCTGCCACCCATGTCTGACCAGAACAGACGTTCCAGGCGGTAGCCTCTTTCACAGCAGAATAAGATCGCCGAAACAGCCACTTACAGGAAGA # Right flank : C # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-2165 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALOX01000213.1 Roseomonas sp. B5 contig221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. CGAAACCACGGGCGGGCAGGGCGGCCGCCAGG 62 29 100.0 32 ............................. AGTTTGCCAGCCGCCTCATCCGCCGCCATCGC 123 29 100.0 32 ............................. GAGGAGGAGACGACGCATCACGAGCGGTCCTC 184 29 100.0 32 ............................. CCCGATCCGCCGACGGCGCCCGCTCCCGCAGA 245 29 100.0 32 ............................. CGGCAGTAGACCCACCAGCCCCGCGCCGACGG 306 29 100.0 32 ............................. GGATCGAGGTAGCCGCTCGGCGCGGCCCCCAG 367 29 100.0 32 ............................. AGGAGGAGCCGGTGGAGTTTCCCTCCGCGTCC 428 29 100.0 32 ............................. TGTCCTGCTTGACCCGCCCGCCCGAAAGCGCG 489 29 100.0 32 ............................. AGACCCTTCGCAGGCTCCTGCCAAAGTCCATG 550 29 100.0 32 ............................. ACCGAAAACGCCCTGGCGGCCCCTCCTAGGCC 611 29 100.0 32 ............................. ACCCCGGACGGCACGCCCGTCGAGGGCGAGCA 672 29 100.0 32 ............................. CCGGGACCGGCGAGTAGCGGAACAGTTCCAGC 733 29 96.6 32 ............................C CTCTCTGCGCCTGCATGCCGGCCCGCTGGACC 794 29 100.0 32 ............................. ATCCTGGGGGAAATCTTCACCCCCACGCGGCT 855 29 100.0 32 ............................. GGCGAGGGCGGTAGCAGCGAGCCCGCCCCTCA 916 29 100.0 32 ............................. GACTCCTGGCCACCATGCTCGCTGCTATCGAG 977 29 100.0 33 ............................. GATACAGCGTGAAACTGAGCATTGCCTTGCGAC 1039 29 100.0 32 ............................. GCGCAGTCGTTGCCCAATGGCGAAAGCGGTAT 1100 29 100.0 32 ............................. AGGGTCAGGAGGGACGCCCCTCTCCCCCCAGA 1161 29 100.0 32 ............................. GGCACCTATGCAGTGGAGATCCGCCCCGGGAA 1222 29 100.0 32 ............................. TACGGCACCACGCTGGACAGCCTCTCCCTCCG 1283 29 100.0 32 ............................. CTGTCTGCGCGGTGTCCTGGCTGTCTCCGGGG 1344 29 100.0 32 ............................. TACGGGTGCGACCTGACCGGCCTCTCCCTCCG 1405 29 100.0 32 ............................. GCGATAACCTCGTCAACAGCCGCATCCTGGAG 1466 29 100.0 32 ............................. CCGTGGCGCATGGCTGATATCCGCGCCACCTG 1527 29 100.0 32 ............................. CCGTCCAGCACCTTGCCTGTGACGACGCAGCA 1588 29 100.0 32 ............................. AGCCGCAATCCTTCTCGGTCCGGATGTGGCCA 1649 29 100.0 32 ............................. TTCGAGGCAAATGCGCGCGTGCGGTTGATAGC 1710 29 100.0 32 ............................. CCGCCGTAGCACGGGAAGCGGCGGTGGTGGCG 1771 29 100.0 32 ............................. GAGTTGCTGGGAACCGCCGACCGCGAGCAGGC 1832 29 100.0 32 ............................. GGAGTAAAGGGCGATCAGGGGACACAAGGCAT 1893 29 100.0 32 ............................. ACCGGCTTCCCGTTCAGGCTCAGGATGGCGCC 1954 29 100.0 32 ............................. CGCTACGGACGCTCGGGTGGACCTTCGGGGAG 2015 29 100.0 32 ............................. AGGGCGCCCAGCCGGTGGAATTCCCAGGTGTC 2076 29 100.0 32 ............................. CCCAGGCAGATGCGGAACTGCTCGGAGACCAT 2137 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.9 32 GTGTTCCCCGCGAGCGCGGGGATGAACCG # Left flank : | # Right flank : AGAGCCAGAAAGACCAACTGTGGATCGGCATGGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2113-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALOX01000172.1 Roseomonas sp. B5 contig179, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2112 32 100.0 33 ................................ CAGATCATGGTCCTGGAATCGTGGATCGGACGC 2047 32 96.9 32 T............................... TCGGTCACCGTGCAGCCACGGTTGAAGCGGGG 1983 32 100.0 34 ................................ GCGGCCATCGCCGCCGACCCGCTGAAGTGGGAGC 1917 32 100.0 33 ................................ GACGCTGAACTCCGGGAATTCGATCCGTCGAAG 1852 32 96.9 33 C............................... AGCCATGCCGGGCTGTCACCGGCCGGTGCCGGC 1787 32 100.0 33 ................................ ACGGTGCCGAGCCACGCCGCGAACTGAGCTCGC 1722 32 100.0 33 ................................ GTAGACATATCGGCGGTCCGACCGGCCGCTTAG 1657 32 100.0 35 ................................ CGGGCGATGTTCTCGGTGCTGAGGCCCAGATCGCC 1590 32 100.0 33 ................................ CGCTCATCTCAGAACTCCAGGCATGAAGGGGGC 1525 32 96.9 33 A............................... AGCAGCGAGCGGCCATCGGGCAGGATGCGCGAG 1460 32 100.0 34 ................................ TCCAGCAACTCGACGTAGCGGGTCTGGCGCTCGT 1394 32 100.0 34 ................................ TTTCGGTTGGTCGGGGAGCACGCACTCGACCATT 1328 32 100.0 34 ................................ GCGCTGGACGACGGGCAACTGGCCTGGCGCCGGA 1262 32 100.0 32 ................................ ACCGAGGAGCTGCGGCACGCCGCGGCGCAGGA 1198 32 96.9 33 C............................... ACATCAAGCCAGCTCAGGCCCACGCAACCAGCC 1133 32 100.0 34 ................................ TCCTTTTCGCTCCGTCCCGCTCTCTCGGCCGCAG 1067 32 100.0 35 ................................ GAGAACGGTACGCGGGCAGGTGTCCTGAGCGAGGT 1000 32 100.0 34 ................................ AGCGGCGACACGCTGACCGCCACCGGCACCGACA 934 32 100.0 33 ................................ TCCGAGAGGGTCACGACGAGGCCATAGGTGTCC 869 32 100.0 34 ................................ CTCGTCCTCTCCAAGCGGCTCGACGAGCAGACGC 803 32 100.0 35 ................................ CCGGCCGATACGACCGAGTTGCTCCCTGAGTGGGA 736 32 100.0 34 ................................ GCCGTCCGGATCGCCAGGATCGAGGGCGGCAGGG 670 32 100.0 34 ................................ CAGTACGCCGTCGGCCAGACCTACACGATGGACG 604 32 100.0 34 ................................ CTGGCGGGCCCGGCACAGGATCACGCGGACCGTT 538 32 100.0 34 ................................ TCGCGCCAATCGTCAGCCATCGAAGCGCGCCAGC 472 32 100.0 35 ................................ GAGAACGGTACGCGGGCAGGTGTCCTGAGCGAGGT 405 32 96.9 34 ......................A......... ACCGAGGAGCTACGGCACGCCGCGGCGCAGGACA 339 32 100.0 34 ................................ TTCCGGCGCGTTTGCCTCAGACCAGAAGTCAACT 273 32 100.0 34 ................................ GTGAGCCGGGGGGGATAGACCACGATCCCATCGG 207 32 100.0 34 ................................ TACGGGGGCCGTGACTTTGGCCCGGTGTGGTCTT 141 32 100.0 34 ................................ TCCGGCCGGAGCCTGGACCGGGCCGTGGCCGGGC 75 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 32 32 99.5 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : CTGGAAGTAGGCCAAAGCCATGCTCATGCTCATCACCTATGATGTCAGCACCGTGACGCCAGCGGGACGTCGCAGGTTGAGACGTGTGGCTCGTGCCTGTCTCGACCATGGTCAGCGGGTGCAGAATTCCGTGTTCGAATGCGAAGTTGACCCGGCACAGTGGGCCGCGCTACGCGCGCGTCTGATGGCCGAGGTTGATCTGGAGCAGGACAGCCTGCGTTTCTACCGCCTCGGCGCTTCGGGCAGAGCCCGGGTGGAACATATGGGTGCAAAGCCCGTTCTGGATCTGGAAGGACCATTGGTCTTCTGAGATGACACAATTTGCGCGATCCGGTAGCGACCATGCCGTGGCGTGGTGGCTCGCGGAGCGCTGAACTCATTGAAAACAGAAGAAGAGTTTGTATAAGCGGAAAGACGCTGCCGGACCGACCTAGGCTTCCACCCTGGTTCGCGACGAGTGGCGGGCAAACCATGGAGCTTTCACAGAAAAAAGTGCCGGG # Right flank : CGCTATCAGTAGAGCGGCCCTAAGTAGTCGGGTTTGAATAACTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //