Array 1 62-571 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALJQ01000021.1 Prevotella sp. MSX73 ctg120008288356, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 62 49 100.0 28 ................................................. CATATTCATCTGGGCTATGGTACTAGTA 139 49 95.9 28 ...............................................GA TGAAGCTGATGTAGAATACAAAGATTTT 216 49 98.0 28 ................................................A AAATACTGTAAAGATTACATCAAAACCT 293 49 98.0 28 ...............................................A. TAACAAACAAACAAATATTCGCTCCGGA 370 49 95.9 28 ...............................................AT GTTGTCCAAGATGCCCATGAGGCAAGAG 447 49 95.9 27 ...............................................GA ATGAAACTCCTTTGTGGTGTTGTCATC 523 49 100.0 0 ................................................. | ========== ====== ====== ====== ================================================= ============================ ================== 7 49 97.7 28 GTTGTGATTTGCTTGAAAATTTGTACCTTTGCGGTAGCAACAACAACTC # Left flank : AAAATTTGTACCTTTGCGGTAGCAACAACAACCTGATTTCGGTACGCTGGTCTCTTGCAGAG # Right flank : CGATATCTATAATTCACTGAATTACAAATAGATACTTTGTTATTGCAAGAAAAATAAAATGACACCGCAAAGCAAAATCCCATTCGCAACGAATGGGATTTTCGCTTTCTATACAATACGTTCAGAATAGTTCCAGCTGTTGGAAAGGAGCATTAGGAAGGGTAGGCCTTTCCCCATAAAATAACTGTATGTTGGCAAATTGCTTGTCTGTAATACACAAAATTCCGACCTTTCCAAACTTCGGAAGATTATTGCGGATACGCTTGATATGCACTTCAGCATTCTCCATACTAGCGCAATGGCGCACGTAAATGGAAAACTGGAACATCGTGAATCCATCTTTAATCAGCACCTTACGGAAATCGATATAGGCCTTTTTCTCTTTCTTTGTATCCGTAGGCAAGTCAAAGAATACAAGAATCCACATAATTCTATATTCACTAAATCTGTCAAAACCAGACATAACAGGTTACATTTCGGGATAGCTAATATGCCGCACC # Questionable array : NO Score: 4.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:-0.5, 7:-0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATTTGTACCTTTGCGGTAGCAACAACAACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.70%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 126492-127613 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALJQ01000026.1 Prevotella sp. MSX73 ctg120008288371, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 126492 49 95.9 28 ...............................................GC ACAGTGCGCTCCGGATCATACACCAGCA 126569 49 100.0 27 ................................................. TTATGTATCCTTAATCGTGAACCTGTA 126645 49 98.0 28 ................................................G CGCGTATCCAACGGTACGCACACATTTT 126722 49 98.0 28 ................................................C TGTATATCTGTAATTCCTCTGTGGGTTA 126799 49 98.0 28 ...............................................T. CATATTACTAACGCTGCACCAATAAGGA 126876 49 95.9 28 ...............................................TA GCACCTTCAGGAGCAATTACACCGTACA 126953 49 100.0 27 ................................................. AGTGGAAATCTTTACATCAAAGTAGCC 127029 49 95.9 27 ...............................................GG CATTTTCGGGTGCAATTACACCGTACA 127105 49 95.9 28 ...............................................TG GCACCTTCAGGAGCGATAACACCATACA 127182 49 95.9 27 ...............................................CC CGCCAAAATATATGCTATCAAAGGATG 127258 49 98.0 28 ...............................................G. GGCGACTCCGCACAGATTGGGTCAAGTG 127335 49 98.0 28 ................................................A GCAGATAAACTGTATGATAAAGTTTATA 127412 49 95.9 28 ...............................................TG GCACCTTCGGGCGCAATTACACCGTACA 127489 49 95.9 27 ...............................................CA CTACGAGCACCGGCGAATCCATCATCG 127565 49 98.0 0 ...............................................C. | ========== ====== ====== ====== ================================================= ============================ ================== 15 49 97.3 28 GTTGTGATTTGCTTGAAAATTTGTACCTTTGCGGTAGCAACAACAACAT # Left flank : ACAACGTGAGTATCGAGCCCTACGGTGGTGGCTATCTGGCCTGCGGCGTAGGCGGTAAAATCAAGGACTACGGCAAGCGTGCGGCCTTCAGCAGCTTTGAAGACGGCTACTTCAACCGCTTCGACGGTGGTCTGAAAATAGGTTGCGACGTGAGTTTCCAGATGCTCACCATAGGCATTGGCTACGACATAGGCCTCGCCAATGTGGGCCAAGATGTTTTCGACGATACTCGCACGGGCTGCTTCAACCTCAATGTGGGTGTGACATTCTAAGCGGCTATAGGTGCTGCTTCTTCATTCATATAGCCACGCCCCTTCCCACACAAACGACTCACCCACCGACACAACATAGAAAGGTGACTGTACCGAAGTTCAATACATCGGTACAGCCACCATCCTTTTGCTTAAAATATGAATGCGAAGATTTGGATTTATGGAATTATTCGTATATTTTTGAGCCAACAACAACTCAACACTCATATCACTCACCTTTTAGTAACA # Right flank : GAGCATATTGCCTTCTCCACCTTTGGCTGTTGTG # Questionable array : NO Score: 4.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:-0.5, 7:-0.03, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATTTGTACCTTTGCGGTAGCAACAACAACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.70%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 67334-68225 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALJQ01000043.1 Prevotella sp. MSX73 ctg120008288370, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 67334 36 100.0 30 .................................... TGGAAAAGGTGGAGCTTGATGGAAACTCGA 67400 36 100.0 30 .................................... AGCATCCAAAAGGCAAAGGAATTCAGAGAA 67466 36 100.0 30 .................................... TGGCCGTTCCGCCGGGCCTCATGCTGTAAG 67532 36 100.0 30 .................................... GCCTGGTCTATTCAGCTATTGATGACAAGC 67598 36 100.0 30 .................................... TTACTACGACGAAGATCAACAAGACCTTTA 67664 36 100.0 30 .................................... TAAATGGATTGTAGTATGATACAGATACCA 67730 36 100.0 30 .................................... TATACCGATTTGTCGCGGTTTGAGATTTTA 67796 36 100.0 29 .................................... TCGTGAAACTTCCTCAATGTCTCTCTGAC 67861 36 100.0 30 .................................... GAATCCGTCGTTGAAGTCCATATTGTAGAA 67927 36 100.0 30 .................................... CGTAGTCTATATCGTCTGAATCATCACTGC 67993 36 100.0 30 .................................... TTGTCACATCGCTAAATCCATTCAACCCTG 68059 36 100.0 29 .................................... CGTCAACTTCCTGCATCCCATGGCCCAAT 68124 36 100.0 30 .................................... GCCTACGTGATATTGAAAGATGGAAATGTT 68190 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTGCATCTGCCTTCTTTTTGAAAGGTAAAAACAAC # Left flank : GAGAATATTGAATATGCTAAATACCAAGCTGTGTTACAAGCACATAAAAGCCTGTATAGACTACTCAGATTTACTACAGATACTGAAAATGAAGATAGCATATTGATTTGGGAAAGACCAAAAGATGGTGGACTAGAAGCAACCTATTATTTCAGAAAAGGAAACATACGTAAATTTATAAAAGAGCTTTCCAAAGAAATATATAACGAAGGATGTGGTATTTTTATGTCAAAAGAGGCTCTGTCACTAATTTCCGAATATAGAAATATTGTTTATGGTTTCATGCTTTCCGCCCAAAACAATCCCCAAGAAACAATAAGAATAACTAATAGAGAGTCTGTAGAACGAATGAAAAAGATTCACCAAAACCTCTCGATAGAAATCAGACAAGCAATCAATCTGAAAAAACGAGATTTAAGATTTTAATAAATAAAAAGTGAGGAAGTATAACCTAAAAAATAAAGAAAATAGATTGGAAATGAGTCGTTTACTAAATATCG # Right flank : CTGCTATTTTATGAATGAAGATTATTACCTTAAAACATAATATTTCGTCATCTCAAATTGAAACATGAGACAGTTATCATCAAATATTAAAGCAAATAATTTTTAAGAAGGATACAAAGTATATAACAAATATAAAAGAGAATTTGGGTCTTGTATGGAAATTCTGTAAGAATCAAAAACTTATATAAAATACGCGATGGGATAAAACGTGATCAAACATACTCATCTTAAATGAAAAGAAAAATGAAAAATCTCTTCTCAAACAAGTCTTTGTTCCCTAAAAAAGACACAGCAAAAGATTCCAAGAGAACCTTTTGCAAGATAAACAAACCATCTTGCAGATTCTACAAGCCATAACAAAGGGACCTACACAATTAGGCCATGAAAAAAGGGAAGCACACATGCACTCCCCTTGCCAACAAAAAATTACAAAATAAATGGACAGGACGTAAAGCGACATGAAATAAGTCGACTACTCTGACATACCATCATCAAATTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTTCTTTTTGAAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //