Array 1 200184-197817 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKLO01000004.1 Rhodococcus xishaensis strain LHW51113 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================== ================== 200183 37 97.3 38 ..........T.......................... GAGGTCTCGGTGGTGCCGATCGGCGCGAACCAGGAGAC 200108 37 97.3 38 ..........T.......................... GCGAAGTCTTCGCAGGCCAAGAACTGCACATCCGTCAT 200033 37 97.3 67 ..........T.......................... TTCGGGCTCTTCGACCACAGCAGGCCGAGGCGTTCTTCGACCACAGCAGGCCGAGGCGTTTGGCCCA 199929 37 97.3 38 ..........T.......................... CCTGCTCGATCGCGGCGAGGAGCACGGACCCTCTCACT 199854 37 97.3 37 ..........T.......................... ACCTGGGGGACCGGCCCGGAGAGATATGACAACGACT 199780 37 97.3 37 ..........T.......................... CGGTGGTGGGGTGAGGGCCTTGCCTGCACGCTCGCGT 199706 37 97.3 37 ..........T.......................... ACCAACGGCGACGGCGATTGGACACCGGAGTCCCCGA 199632 37 97.3 38 ..........T.......................... CTCTATCCGATCCCGGCGGGGCAGCGGCGGACCGACTT 199557 37 97.3 37 ..........T.......................... CACAATGCTCACGTCCATTGCGCCACCATCCAATCCA 199483 37 97.3 40 ..........T.......................... GCGCCCCCCTGAGGGTCCGTGTACCACCCCGCGTTCGGCG 199406 37 97.3 37 ..........T.......................... GGGCACAGCGACACGCATGTCCCACTCCAGATCGCAG 199332 37 97.3 36 ..........T.......................... GGTGACCTGCTGGTCGGAATGATGCCGGGTCTGACT 199259 37 97.3 41 ..........T.......................... CGCAGTCGCACACGAGCATCAGGCCACCTCCTCGATGAGGA 199181 37 97.3 37 ..........T.......................... CCCCGGAGAGTGCGGGAGTTGATCGAGGCCCGTGCGG 199107 37 97.3 36 ..........T.......................... GCCGAGCCAGCCGTTGTCGCAGTCATGCGATGGGGG 199034 37 100.0 36 ..................................... CGGTGCCTCAGCCCACGCTGCCGGGTTGACGATCAT 198961 37 100.0 36 ..................................... GCCGAGCCAGCCGTTGTCGCAGTCATGCGATGGGGG 198888 37 100.0 36 ..................................... ACAATCGCTGGCGACAACCACAGAGACTGATGGGAA 198815 37 100.0 37 ..................................... GTCGAGGGTGTCAACCTGGTGGACGGGAGTGTCGAGG 198741 37 100.0 36 ..................................... GCATGGCCCGCTTCCCTCAGGCCACCGCGCAACGAT 198668 37 100.0 40 ..................................... TTTGCCGTCTGACCTGCGGTTCAGCTCGATTCGGCGGATG 198591 37 100.0 41 ..................................... CGTGAAGTTCCTCGGCGCCAATGCCGTGCGCACGCAGGCAG 198513 37 100.0 36 ..................................... GATCACTTCGACAACCGTGCGGGAGACCCGAACCTG 198440 37 100.0 37 ..................................... TCGCGGGTGTATTCGTGCCCTTGCGGGCAGTGAGTGA 198366 37 100.0 38 ..................................... CCGATTCTTCTGCGGCGACGGACTAGCGTCGTCGGCCT 198291 37 100.0 36 ..................................... GTCGTTTCCAGACCCCATTCTTCCGGGACACCCAGC 198218 37 100.0 37 ..................................... GCGCAGAACCTGTCCGTGGTCGGCTACCGCACCGCCA 198144 37 100.0 36 ..................................... CTGGGGGAGTCGAAGAAGGCCACCTACCGCGGCACG 198071 37 100.0 34 ..................................... GCGGTCGTTTGGCGTTCTGGACGCGGAAGTGCTG 198000 37 100.0 36 ..................................... GAATCACCCTGGCTCAAAGTCCCCGAGGCCGCACAG 197927 37 100.0 37 ..................................... GAGGCCCGCGAGACCGTCATGAATCACACGTGGGGAT 197853 37 97.3 0 .................A................... | ========== ====== ====== ====== ===================================== =================================================================== ================== 32 37 98.6 38 GCAGCATCGGCCCCTCGGGGCCGATGAGGATCGCAAC # Left flank : CACTAATCCCTCTCGTTCAGGCACGATTACTCGCCCGGCATTTACGTGGCGACCTCGCCACATACCGACCTTGGACCGTGAACTGACATGGATCTTCTCGTTACTTACGACGTAGACACCACAACTCGAGAAGGGCAAAGACGTTTACGACGGGTCGCCAAAATATGCGAGGCCTATGGGCACCGAGTTCAGAAATCAGTGTTCGAAGTCGTGTGCCGTGATACCGACGAATTGCGCCTGATCGCTACGCTCCGCGCAACAATCGACCACGAGCGTGACAGCATTCGCCTCTACTCACTGCCATCTGGTGCACTCGACGAAGTTGAACACCTCGGAGTATCACGGGAGATCGACCCGCGGGGACCCATAGTGATCTAGGAACCGGAAGTGGGCGCGCAACCGGCGGGGGCGCCTAGGCAAAGAGCGGACGATTCGGGCGCCAGCAGGCGCTAGAGGCCAATATCATATGAACCCTGACGTGACCTCGCTGGTCACAGACG # Right flank : ACCGTCGTACGAAACGACTTACTCAACAACGATGAACGCAGCAAGATCGGCGGCACGGGGCACGCGACTACGCGGCTGGCGCAGCATCCCCGGCCCTCTAAGCAAGCGTGAAGCCCCTTTACCCCGTCCCCCGGGACGTCGGTAGCGCTGGCCAGTGCGGCCATTCGGACGGCCAGGTCTGCCGCGCCAGCGGGAAACCGAGACAGTCCCCTCACGCGCCTTCACGCGCGCCCCTGAGTGATTGACACCCCAGCCTCGTGGCAAAATCTCGCGCTTACCTCGAAGTTGCGCACCAGGGGAACGTCCCAAACATGAGCAGGGGCCTGTTCCGCCAGCGCGACGTCCGGGTGCTCCGATTCCCTTGACCACTTCCTCTTGGGGTGGGTCCGGAGATCAATTTCCCAGGTCACAGGGCCCTCGTGTAGCCTGCAAAGGTTGCTGACGCAACGACCCTCCTGCCACGGACAGCCCGTGGCCGTTTCACAGTCCATAGGAGGTGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCATCGGCCCCTCGGGGCCGATGAGGATCGCAAC # Alternate repeat : GCAGCATCGGTCCCTCGGGGCCGATGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.80,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 376267-376130 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKLO01000001.1 Rhodococcus xishaensis strain LHW51113 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================== ================== 376266 23 95.7 31 C...................... CGTGCCCGAAGCCGAACCGGGCGTCGTTGAT 376212 23 100.0 37 ....................... TACCGCGCCCGAAGCCGTGACGATCGACATTGTTGGC 376152 23 95.7 0 ...T................... | ========== ====== ====== ====== ======================= ===================================== ================== 3 23 97.1 34 TGGCGCCGAGATCGATCCGAAGC # Left flank : AGGAGACGAGGAGGGAATAGCGCGACCCGCTCGTGGCGAGGCCGGGTTCCGGCGCAGAACAGACGGTTTCGACGAACGACGAAGTTGTCATGGCGCAGGTCTATCGCCCCCGAACGGCGGTAGGGCGTCAACCGCGTGTCGCGTCGGTGCAGCTTCGGTGAACGGACCGCGCGTCGTACCTCCGCCGTCCGCCCTTCGTTCGCGGAAGACCGTTCGTACGCGGACGGACTCGTCGAACTAGAAGCTCCGGCTCCCATGCCTGCCGATTCGGCGGCATGGGAGCCGAGGTGGGTGGACGTGCCCGACGAAAGGGCCAGCCACCGGCTCAGCAATCGAGAGACCCGAGACGGTTCAGGACAGGAATCCGTGGCCGGGTTGAAGCCTCCGAATCTCCGTGGTCCCGAGTGGAACCCCGGTCACCAGAACCTACCGAACTCGTTTCCGTAGCCGTGGTGTCCTCCATAGCCATGGTGTCCATAGCCGTGACTGACGTCGTTGAT # Right flank : CGTGCCCGAAGCCATGACGGACGTCGTTGATCGGTGCCGAAGCCGGCGCGCTGGGCGCTGCCATGGCCGGCGCGACCCCGAGTCCGAGGGGCAGCGCGGCTAGCGCTCCGACGACAGCGATCTTGGCGAGAGTACGGCGTGAGGGGATGGCCTTTGTGTTCATCATCAAATACTCCTTGGTCCACATGCGGATCCGTCGCCTTGGCGGGCGTCGGAACCGACGGGACTCGTCCTCTACGTGACGGACGGGCCAAAACCCACCGTACGCCTGTCGACGGTGGGCTTCACTGGGTCGGAATCCCATGCCGCGCAAGCGCAATAGCCGTTTCGGACCCCATCTGATCTTCGGTTCCCGCCGCACCGCGATGATCAGCGCAAACGCTCGCTACACGAACGAACAGTTCCCCCGATACGGTCCTCGGGCGCCCCTCGAAGGTCACCGGACGACGCTCGCAGCCGTGACGAAGATCACCGAATCACGCCCGCGGCCGCAACCCGCC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGCCGAGATCGATCCGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //