Array 1 58925-59293 **** Predicted by CRISPRDetect 2.4 *** >NC_019387.1 Thermus oshimai JL-2 plasmid pTHEOS01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 58925 30 96.7 39 .............................T GTGTACTCGCCATCAATGGGCCCCGTGAGCTTATCCAAG 58994 30 100.0 39 .............................. TTTTAATCACCTCCGGCAGAGTCGGCTGTCTACGGGGGC 59063 30 100.0 38 .............................. ACGGAGGTGAGTGATGGTGAGGCGGCATTTCCTGGTTC 59131 30 100.0 38 .............................. AAATCTCCCCCACGAGCCTCCTCATATACCTCAGGTCG 59199 30 100.0 36 .............................. GTTAGCCGGGCGGCCTTCCTTGCGCCCCTTGCGCCA 59265 29 76.7 0 ..............-..G..A.CC...GC. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 95.6 38 GTGTCCACCGTACCTTTAAGGGTTTGAAAC # Left flank : CGGTGGAGGAGTGGCTTCCCCTCCGGGACTACCTGGCGGGGCTCCACCCCATCCCCTACCCCCATCTCCTCCTCCGCACCGCCCGGGGGAAGGGGCGGGGGAAGCCCTTGAGTCCCCTGGCCCTGCGCCTCCTCCTGGAGGACCTCTTCCACCATGCGGGCCTAGGGGGGATCAAGCAGATCATGCGCGCCCTGCAGTACCGGGCGGTGCGCCGGTTCTTCCAGCGGGGCTTTCCCAAGGAGAAGGTGGCCTACTTCGTGGGGGTGAAGCGCATCGCACAGGGGTGGGAGTAGGGCTACATTGGAGAGAAAACTTATACCTAGTCAAAATCTGCGCGAACCCCCAATCCCCCCTAAAACCCCGGGGGGTTGACGCACACCCCCCCACCCAGGCTATAATCCCAGCCAAAGCGGCCTCTCCCCTTCTCGGTCGCAGCGGATCTTGAAAATCAAGATTAGACTTTGATGAGAGCCTGCTGTGCAGGACGTTGTGTTTAGGGG # Right flank : CTCAAGGTTAGCCTTAACAGGCTGGCCTTGGTGGACGGGATGGACTCGGAGGTGATGGGATGACGTGTCTGCCCCGTATTCTCCGGAGCTGCAGCCGGTGGAGCGGGTGTGGCCGTTGGTGAACGAGGCGGTGGCCAACCGGTACTTTGCGACCCTGGAGGAGATGATGGGGGTGGTGGCCGAGCGGTGCCGGACCCTTGAGGAGGGCCGGGCCACGGTGCGCAGGCATACCCTCTTTCGCTGGTGGCCTAGAGTGAAGGAATCTACATAAAGGGTATCAAAAGGGTATCAAACTAAAAAACTTCCCGGATCAGCCTCTTCACAAGTCACGGCGGGAAAGGATTTTATAGTCTCCCACCCTTCCTCTAAGAAAATTGCAAAAGAAGGGACTTTAGGGAAAAAACCATTCTCAGGCATCTGTTTCTTCCTAGGAAAGCCCGTTTGGGAAAGAATAAGCACGTCTTTCGCTCGGGTAAGGGCCACATATAAAAGCCGAGCCT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCACCGTACCTTTAAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 677801-676672 **** Predicted by CRISPRDetect 2.4 *** >NC_019386.1 Thermus oshimai JL-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 677800 36 100.0 41 .................................... GCGTCCCGGAGACCTCGGGGAACTTCGCACCCAGCGCCAGG 677723 36 100.0 42 .................................... CGTGCTCGTTACATGGGGGTACTCCCCCCTGGTCAGGCTCAG 677645 36 100.0 44 .................................... CACATGCTGGCCAGGAGAATGATGAGTTTGGCGAGGTCAACGCT 677565 36 100.0 40 .................................... TCGTCCGTGTAGGACAGAGAAAACGGGAGCTTCGTCGTGA 677489 36 100.0 43 .................................... AGAGAACCGGCCACGGAGGGACATGGCCGCGCGCTCCAGGAGG 677410 36 100.0 46 .................................... CTCCACGAGTTCGGGGCCACGATCCGCCCAAGGCGTAAGCCATTCT 677328 36 100.0 44 .................................... TTTACCAGCGCGGTGGGCCATGAGGACACCGCGCGGGTGATGGG 677248 36 100.0 42 .................................... ACCCAAGCGAATAACCAGAAGCTTCTTCATGGCTTCCCCCTT 677170 36 100.0 40 .................................... CTTTCAACGACGCGCGCGTCCAATGGGGCGCGCTTCCGGG 677094 36 100.0 39 .................................... CCCATTCCGCGTGCCCCTTGAGGACGTAGTCCCAGTCCC 677019 36 100.0 43 .................................... CACTCCACCACCTCCACAAGCACCCACCGGAAGGCGGCCCCCT 676940 36 100.0 41 .................................... CTCCCCACCCCTCGGCGAGCCGGAGGAGGGTTTCCCCCGGC 676863 36 100.0 40 .................................... GCCTTTTCCTCCGCGGGTAGTTCAAGAGCCGCATTCAGCG 676787 36 100.0 44 .................................... GCCTCAATGTACGCCCCCAGCTCACCGGGGGCCTCGAGGCCCAA 676707 36 80.6 0 ............................C.ACACCA | ========== ====== ====== ====== ==================================== ============================================== ================== 15 36 98.7 42 GTTGCACGAGATGCTTCCCCGTCAGGGGATTGCGAC # Left flank : CTCTGGACCCAGGGCCTGGTCCTCCTGGCCTACCTCCTGGGCCAGCACCTGCCCCCCTGGGCCCTTTGGGGAGGGCTGGTCCTGCTCGTCCTCCTGGGGCTCTTCCTTAGCCGGAGGGGATAGGAGGGCCGAAGCGGAGGCCTCCTTTGCTAGGAAAAACTAAAGCTTTAGCTCCCAAAAGGCACCTGCACGAACGCATTTTCCAAAAAACTCAAGACCGCCCTTTCCGATGGGCACCCAAAGGGTCTTGACCTACCAAGTCCAACGCTGATAGCATGTCCCCAAAGCCGGGGTTCCGGCGGGGGATCTTGACAACTCAATCTCGTCCAGCACGCGAGTATGCGCATTCGGATTCTCATCGTACCTTCCTCTGTGGCTTAAGCATGGGCCTAAACCTCGCAAAGAGCCCTCTATTCGCCTTATGTATATTCCAACCTTCATCTTTCTCACAAACCCCCCTTCAGCACGCCCGTCCAGGACGAGGTTCTTTAGGGGGTAGA # Right flank : AACCCCCCAGGCGCTTCCTGGGGGGTTCCTTTTTGGGCTGGGGCGGGGCTAGATGTACTTGTCTCCCCGCACCACCTCCACGTTCTCCACGTAGGCGATCACCGCGTAGTGGGGGAAGTACTCCTCCTGGAGCTTCTTCAGGATCTTTAGGGCCACCTCCTCGCTTACGATGGTCTCGAGGCGGATGTTCTGCCCCTCCCAGTCCACGCTCCTGAGGCCCCGGGAACCCTCCCCCCGGGCGGGGGTGATGGTGTAGCCCTTGGCCCCCAGGCGCTTGATCTCCTCCACCAGCCGCTTTTCCAAGAGGCTTTCCGCCACGATGGTCACCAGCTTCAGCCGCACCAGCTCCATACCCTCACCCCCCAAGGAGGCCCGCAAGGGCGTGGTAGAGGGGAATCCCCAGGATCAGGTTAAAGGGAAAGGTCACCGCCAGGCTGGCCGCCAGGTACAGGCTGGGGTTGGCCTCGGGCAGGGCGATGCGCACCGCGGCGGGGGCGGCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTCAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 781059-780566 **** Predicted by CRISPRDetect 2.4 *** >NC_019386.1 Thermus oshimai JL-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 781058 36 100.0 42 .................................... CCATATCCCACCCGCCTCCAACCCAGGCGCGGTAGGCATCTT 780980 36 100.0 42 .................................... AGGATAAACCTCTCCTCCAAGAAGGCCCGGGCCTCCTCCTCC 780902 36 97.2 37 ......................C............. CCCTCTGGCAGGCGGGGGCCGGAGTATTGCCCCACAA 780829 36 100.0 40 .................................... GCCTCCACCCACCCCATAGTGTTCTCCTCCTCCACGATGC 780753 36 100.0 40 .................................... TAGGTGCCTTGCCGCGGGGGGCTGGCCCCTGGACTGTGGG 780677 36 100.0 40 .................................... CCTGCTAGGCTGTCAATCAGGCGGGGGTCCAAGGGGTCCC 780601 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 99.2 40 GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : GAGGACCCCATCGCCAGCTTCCCCGCCCGCCAGGTGCGGGGGGTGGCCCTTTTCGGCAACGTGCGCCTCTCCACCCCCGCCTTGGTCTTCCTCCTCCGCCAGGGGGCCGCCCTGCACTTCTTCTCCCTGGAAGGGGCCCTCCACGGCTCCGCCGGGGCCCACCCCGACCCCGAGGTCCTGAAGGCCCAGCTCCAGGCCCCTCCCCTACCCTTGGCGCGGGCCTTCGTGGAAGCCCATCCAACGACCCTTGACATACCAAGTCCAGCGCTGATAGCATGTCCCCAAAGCCGGGGTTCCGGCGGGGGATCTTGACAACTCAACCTCGTCCAGCACGCGAGTATGCGCATTTAGATTCTCATCGCACCTTCTTCTGCGGCTTAAGCATGGGCCTAAACCTCGCAAAAAGCCCTCTATTCGCCTTATGTATATTCCAATCTTCATCTTTCTCACAAACCCCCCTTCAGCACGCCCGTCCAGGACGGGGTTCTTTAGGGGGTAGA # Right flank : ACCGGCCATTTGGGTTAAAATGCCCACATGGGAAAGAGGCTGTACGCCATCGCCTACGACATCCCGGACGACACCCGCCGGGTTAAGCTGGCCACGCTCCTAAAGAGCTATGGGGAGCGGGTCCAGCTATCCGTGTTTGAGTGCTACCTAGACCCCAAGCTTCTGGAAGACCTCAAGGCCCGCGCCCGGAAGGTGCTGGACCTTTCCGAAGATGCCCTCCGCATCTACCCCATCGCCGGCACGGTGGAGGTGCTGGGGGTGGGGCCCGTGGTGGAGGAGGCCCGGTTTGCCGTGCTATAGACCCCCGTGTGCAAAGATCACAGGGGGAAAAGAAAAGTGGGGTAAGCTTCTCCCCGTATGGCGCTGGACGCCAAAGACCTAGCCCTGGCCGCCCTCCTCCACGACGTGGGCAAGCTCCTCTCCCGCGCCCGCTGGGGCGAGCGGGAGGAGGGGGACCGCACCCACACCGCCTACACCGCCCGCTTCGTCCGGGCCCACGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 883774-878387 **** Predicted by CRISPRDetect 2.4 *** >NC_019386.1 Thermus oshimai JL-2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 883773 29 100.0 33 ............................. CGAATATAGTGGCCATTGCTATTGTAGCCGTAC 883711 29 100.0 32 ............................. ACCACGAGGACCGTGAGGTCCCGGTGCCTGCC 883650 29 100.0 32 ............................. CTCCAGGCGGCCCTAAACGCCGCTGGAGCCTA 883589 29 100.0 32 ............................. CCCTGGGCCGTCATGTTTGTCTTGAAGACCCT 883528 29 100.0 32 ............................. GTCCGGGTGCTGGATGACCACCCCCGGGGTCA 883467 29 100.0 31 ............................. TGCGGACCCAGGCGGACCGCATCCGTAGGGC 883407 29 100.0 32 ............................. CCGCCCCGCCGCGCTCAGTAACTCCTCCCGGC 883346 29 100.0 32 ............................. TGATCTACGCCGATGTGGACGGGGCCACTACC 883285 29 100.0 32 ............................. GCCGTCCAGGACGCTCTGGTGCGGGCTGGGGT 883224 29 100.0 32 ............................. ATGCCTGGGACGATGGGGGGGTCTGGGACGAC 883163 29 100.0 32 ............................. GGCCTCCCGCGGGGTCATGGCCGTGGCCGCCC 883102 29 100.0 32 ............................. CCCTGGAGGGCCCTGGGGGGCTCGGGGGGCTT 883041 29 100.0 32 ............................. GACGAGGCGAAGGCCCTCTGCACCGTGCGCTC 882980 29 100.0 32 ............................. CCCAAACCCACGCGGTTTGACGAAGTGCCTCA 882919 29 100.0 31 ............................. ACCGCCTTGCGCTCCCGCAATCGCATCCCCC 882859 29 100.0 32 ............................. CGATGAGGACAACCTTGGGCCACTATCCGCCC 882798 29 100.0 32 ............................. AGCCCGCTGGGCCTCCAGCACCGCCTCGTACA 882737 29 96.6 32 ............................A GTGTGGGGCATGGACGAGCCAGGGGATAGCCC 882676 29 100.0 31 ............................. AGGGGCGTCGCCTAGATGCCGTCCCTGACGC 882616 29 100.0 32 ............................. TGGATGACCTTCCTCGTGGCCGTGAAGGCGGC 882555 29 100.0 31 ............................. AACCTGACGCCGGAGGACCAGTGGGAAACCG 882495 29 100.0 32 ............................. TTGCCAGGATTCGCGTCATCTTGGTTTCCTCC 882434 29 100.0 32 ............................. CTGTGGTGTACGCGCGGGCGGGTTTCACCCCC 882373 29 100.0 31 ............................. GTGAAGACCGACCTCCAGAAGCTAAAGGACA 882313 29 100.0 32 ............................. TCGGGCGGGGGGGAGTCCCACGAGCTCCCGAT 882252 29 100.0 32 ............................. TGGGGAGAAGGACACCATAGACTGGGAACGCT 882191 29 100.0 32 ............................. CTCACCATGACCTCGGAGGAGGCCACCGTCCA 882130 29 100.0 32 ............................. TACATCGCAGGGTCTGGCCTGTTTGGGGTGAA 882069 29 100.0 31 ............................. AGGGCGTCTATGGCGTCGTTCAGGTCAGTGA 882009 29 100.0 32 ............................. GACGAACTCACGGAGGCCGCCCGCCAGGCCGT 881948 29 100.0 32 ............................. GTGGAGGAAGCTCTGCGTGAGCCCGGGAAGCG 881887 29 96.6 32 ............................T GAGGGCGTTTATGGCGGCCTCCACCACCCGTA 881826 29 100.0 32 ............................. CCCTCCCCCCGCAGCACCAGCTCCGGTCTCCG 881765 29 100.0 32 ............................. CCATTCGTGCGCCCGGCCCTGGAGGAGGCCAT 881704 29 100.0 32 ............................. GAGGCGCCAATGAGGAGCAAGTACACCCAGAT 881643 29 100.0 32 ............................. CTGGACGTCTGGAACCCGGGGGCCCTGGTGAT 881582 29 100.0 31 ............................. GCCACCCCCGAGGAACTCCGCCGCCTCCGGG 881522 29 100.0 32 ............................. CTCGTGCACGCTGGAAACCGGGCAATACAAGG 881461 29 100.0 32 ............................. GGGGGTGCGCATGGACTGGAAGGCGCTAATCC 881400 29 100.0 31 ............................. GGGCCTGACCACGATTCTGGGCACGATAATC 881340 29 100.0 32 ............................. CCCTACAGGGCATCCTCAGGCAGGCCCAGGAG 881279 29 100.0 32 ............................. GTGCGGCATGAGTGGAATCGCCGAGCTAAAGC 881218 29 100.0 32 ............................. GGTTCAAACAACAGCAGGAAGGCCGCCCTCAG 881157 29 100.0 32 ............................. CCGAGCCTCAACCCTTTCCAGGGCCTTCTCCA 881096 29 100.0 32 ............................. CTTGGGGGGAGCGGCTTTGGAAAAGGGGGCGC 881035 29 100.0 32 ............................. ACGTCCTTCCACTCCATCAGCAGAACACCCCC 880974 29 100.0 32 ............................. CGGTCCAGGATGAGGTTGTGCTGTTCCCCTTC 880913 29 100.0 32 ............................. CGTACCGTCCTCCTCAAAGACGGCGCGCCCCA 880852 29 100.0 32 ............................. GCCAAGGGGGAGGCTAAGGAGGAGGCTACCCC 880791 29 100.0 32 ............................. CCCGTGGCCTCAGAAAACTCCTCGGGGGTCCA 880730 29 100.0 32 ............................. AGAAGGCCCAGGGTCCCAACTGGCTCCTCATC 880669 29 100.0 32 ............................. CTTCCTGGGCTTCTCCAGGCCCATCTGGCGGA 880608 29 100.0 32 ............................. GATGGCCCACGCCTCCTGCAAGCCGTTGCTCC 880547 29 100.0 32 ............................. GGCGGGCCCGACTACCAGGAGTACACGGGCAG 880486 29 100.0 32 ............................. CCTTCCGGGTTCCACCCCACGCCGTCAAGCCC 880425 29 100.0 32 ............................. CCTTCCGGGTTCCACCCCACGCCGTCAAGCCC 880364 29 100.0 32 ............................. TTCAGCGTAGCCGGCAGGAGGGCGGTAGCGGA 880303 29 100.0 32 ............................. CTCGGCGTAGAGCCCGGTGGAAGAGTAGATGG 880242 29 100.0 31 ............................. TCTTACTTTTGACCCCCCTGTGGGCCGTAGC 880182 29 100.0 32 ............................. CTGACGGTGCGGGCCGCCGGGTTAGGCAGGTT 880121 29 100.0 32 ............................. GCCAGCGCGCTCGGCTACCTGGCGCTCGCTGG 880060 29 100.0 32 ............................. GCCTCGGGGTCCACGCAATAGGTGAGGACCTT 879999 29 100.0 32 ............................. GCCACGTAGCTATGGGGGTCCAGGCGGATGAG 879938 29 100.0 32 ............................. GGCCTCGTCCCGGAGGACCTGGAAGAAGTTGT 879877 29 100.0 32 ............................. CCTAGAGGCCTGGCTTGTGGAACGCGGTACCT 879816 29 100.0 32 ............................. GTGCCCGTGGACTACGCCCACTTGGAGGAGAA 879755 29 100.0 32 ............................. GTGCAGGTGCGCACCACCCAGAGCGTGGCCCC 879694 29 100.0 32 ............................. GAGCAGATCGCCATCGTCACGGGGAAGACGGC 879633 29 100.0 31 ............................. TGGCGGTCCCCGGCGACCACATCATGGGGGC 879573 29 100.0 31 ............................. ATGCCCATCGGCCAGGCCAACGGGGTGCCCC 879513 29 100.0 32 ............................. CCGTGGTCCAGAAGGAGCCGGATGACGGCCAG 879452 29 100.0 31 ............................. GCCCAGTGGGTGGACCTTCACCAGGTGCTCA 879392 29 100.0 32 ............................. CGGGAAGGGCCGCCACCTCCCCGGCGGTGGCC 879331 29 100.0 32 ............................. ACTCTACCCTGCCCCCGGTGCGGCTCCACGGA 879270 29 100.0 32 ............................. CCCTCCGGGACCTCCCGGCGCAGCTCACGGAC 879209 29 100.0 32 ............................. AGACTCCTCCCACCGGACTACTGGCCCGGGAT 879148 29 100.0 32 ............................. CTGGACGTCTGGAACCCGGGGGCCCTGGTGAT 879087 29 100.0 32 ............................. GCCTTCCGCCGCAGGGCGCGGTAGGCCTCGGG 879026 29 100.0 32 ............................. CTGGGCCCTGACGACCTCCAGGGGGACGCTCA 878965 29 100.0 33 ............................. GAGGATTTGGGGGGCGTCCACCACGACCCGGAC 878903 29 100.0 32 ............................. GGAACTGCCAGAGTGCCGGCTAGCCGCGGGCC 878842 29 100.0 32 ............................. CCGCTCGGTGCGGTTGAGGAGCCGCTGGAACA 878781 29 100.0 32 ............................. GAAAGAGCTTGTGGACGGGCAGCCCAAGGAAC 878720 29 100.0 32 ............................. CCGTGTTCCTTGGCGACGCGGAAAAAGCTCAC 878659 29 100.0 32 ............................. CGGACCTGGGTTTTCCTTTCCCGAGGCGAGCG 878598 29 100.0 32 ............................. CTCTCGCATCTTCTTCAGGATTAGGTCATTGA 878537 29 100.0 32 ............................. GGATATGGGGCCTATCCGTGCGATGGTCCCAA 878476 29 100.0 32 ............................. ACAAGGCAGAGGTAGCCGACGTCCCGGGAATC 878415 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 89 29 99.9 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGAGAAGTTCCCGTAAGGGGTTTGGAAGCATACGGGCTAGCTTTTCTAAGGCGCTCCCGTACTGCTTTGTCGGGGCTTGGTGGTAGAGAAGCCTTCCCGCAGCGAAGAGGGCCAACGCCTCTACAGGGTGAAGGGGAGGAGAGGCAGCCCGAAGGGCATACTGCCCCCGGCCCACCCGTTCCACGGCGTAGCCCTGCTCCCGGAGGGCCTCGAGGTCGCGCTCCACCGTGCGCTCCGTGACCCCATAGCGGCGGGCCAACTCCCCAACCCCATGAGGGCGGAGGGCTAAGCGATCCACCAGGTCCATCAGCCGGGCGGTTTTGTTCTTCCGCTCCATGTTCTTCTCCAAGATACCGCTAGGCTGTGCTAAGCTATGGGGGATAGCCTCCTTCTTCTCTCCGCCCCTTCCTCGAGGCTATGGGCACCTTGAAAAGTTGTCCTGGATCCTAAAAAGACACATAGAGGGGGTCCAGGGGTGTTTTTTGCCGTCCTGGTCAAGT # Right flank : TGTGATATCCTCCTCCCCGTGGCGCTGGCGCTTTTGGTGGGCTACGCCTTGGGAAGCCTCCCCTTCGCCTACTGGTTCGCCGGGCTCAGGGGGGTAGGGCCCGAGGGGCTTAGCCCCTTTCCCCGCCTCCTGGTGCTCCTTTTGGAGCTGGGCAAGGGCCTTTCCGCGGTGGCCTTGGGGGAGTTTCTCGCCCAAAACCCCCTGGGCGGGCTCCTTGGGGGGGTGGGGGCTTCCTGGGGCCAGGCCTTCTCCCCTTGGCTCCTCCTGGGGAAGGCGGGGGGCGTGGCCCCGGTTCTGGGGGTGCTTTTCGCCGTGGACCCCAGGCTCCTCCTAGGTCCTGGCCTCATCTTCCTGAGCCTCTGGGCCTGGACGAGGCGCAGGGAGCCCGCCCTTCTTGGGGCCTCCTTAAGCCTTCCCCTTTTCGCCGGGCTCTTCTGGGAAGGGCTTGGGGTGGGGTTTGGGCTCCTTACCGCCCTTCCCTGGCTCCTTCGGCTTTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 893456-895313 **** Predicted by CRISPRDetect 2.4 *** >NC_019386.1 Thermus oshimai JL-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 893456 29 100.0 32 ............................. GGAATGGAGCCCGGACCCCGCGGGCTACCCGC 893517 29 100.0 32 ............................. AGGAGGTGGCGGAGATCGTGGGGCGGGTGGTT 893578 29 100.0 32 ............................. AGCTGCACGCCGCCATCCGGGGCCTGGACGAG 893639 29 100.0 32 ............................. GGATCGCCGCCTGGTTGCGGGCCCAGGGGTAC 893700 29 100.0 32 ............................. ACATGCCCATGAAAACGCGGAGTGATTTAGTC 893761 29 100.0 32 ............................. TGCGGTGAGCCCAGGTGGGCGGAGGTGTACCC 893822 29 100.0 32 ............................. CGGAAGACGCCCTTCGTGGTCTCCACCTCACC 893883 29 100.0 32 ............................. TACCTCCACGAGGGCTTTGCTTCCTGGACGCA 893944 29 100.0 32 ............................. CGCTCCCCCACCTTGGGGTCAGCGCCAGCCAT 894005 29 100.0 32 ............................. TGGACGGGGACCACGCCGTTCTCCAGGAGGTC 894066 29 100.0 32 ............................. TACGGCACCTTGACCTTATCCCCGCCCCTGAC 894127 29 100.0 32 ............................. GGAGAGCGATGGCCCGCCACACCCCCATCTCC 894188 29 100.0 31 ............................. TCCCCGGGGGCATGGCGCAGGACACCCCGGC 894248 29 100.0 32 ............................. GAGGCGTGGGCGGTTCTGCGGGCTCAGAAGAA 894309 29 100.0 32 ............................. CGGGGGGTCATCGCCGCCGCCGCGGTCCTCCA 894370 29 100.0 32 ............................. CCCCCGGTGGTCCGCCTCATCACCCAGTAGGT 894431 29 100.0 32 ............................. AGGCCTCCCACGGCCTGGCCAAGAAAACCCAG 894492 29 100.0 32 ............................. GGCTTCCTGGAGGCGGCCCCCCGCCTGCTGGG 894553 29 100.0 31 ............................. GACCCCTCCCTGGTCTCCGGGGTGGAGTCCC 894613 29 100.0 32 ............................. GGGAGGGTTCCCTAACCGCGTCCGCTATCCGC 894674 29 100.0 32 ............................. TTCGCCTCCCGGTACCTGGGTCACCTCCCGCT 894735 29 100.0 31 ............................. GGGGCCCTCGCTGGGTCCCCAAAGGTCTTGG 894795 29 100.0 32 ............................. CTCGCCGCCCTCCAGAGGGAGCTTCCCATCGG 894856 29 100.0 32 ............................. CGAGAGGAGGTGAGCCTGAAGCTCTTCGTGCG 894917 29 100.0 32 ............................. CTAGGACCAGGAGGAGGCCCACCCAGATCAGC 894978 29 100.0 32 ............................. CTTATGCACCCTCTCAGGGGGAATGCCGGTCC 895039 29 100.0 32 ............................. TAACCTCCTGGAGGAGGCGCTCAGCCGCGGCC 895100 29 100.0 32 ............................. TGATAGGCTATGGCTATTATCCAACTAGACAC 895161 29 100.0 32 ............................. TGGGGGTGCCCCCTCCCCGGGACTACGACCCT 895222 29 100.0 32 ............................. GTGGCCTAATGAAACGGGTGCGCAACCGGCTC 895283 29 93.1 0 ......................A.....C | A,T [895307,895309] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTAGTCCCCACACGCGTGGGGATGGACCG # Left flank : GGAGGAAGAAGACCCCATAGAGGAAGATCCCACCCGCCCCGGGGGCCTATGGGACCCCGAAGGCGAGGTGGAAGGGGGCGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTACCGAAGAGTCTTAGGGGTGAACTCACCCGCTGGCTTCTGGAACTGGATACAGGAGTGTTTGTAGGCCGCGTAAGCGCCACCGTGCGCGACCTCCTTTGGGCCAAGGTCGTGGAGAAAGCCGGTGATGGGCGGTGCGCCATGGCCTGGCGCACCAACAACGAGCAGGGCTTTTCCCTTAGGCTTCACGGTTATCAAGACCGGGCCTTGAGGGACTTTGATGGTATAGTGTTGGTGGCGGTGCGCAACGCGGAAGCCGTCCGCAAAGCTGAAAAGCTAAAGCGGACCCAACCCAAGTTGCGCGGGGATCTTGACAAGAAAAACCTGGACTAACTCCTCTTAAGACACATAGCAGGGGGTAAGTTCGGGCTTTTGCCGTCCTGGTCAAGT # Right flank : CTGTAGACAAACCCGCCCCTTCTCCCTATACTGGTGGACGCTACGGGGAGTAGCGCAGCCCGGTAGCGCACCTCGTTCGGGACGAGGGGGTCGCTGGTTCAAATCCAGTCTCCCCGACCAAAGCCGGCCTTCGGGCCGGTTTTTTGTTGGGTATACTGCCCCCCATGGGCTTTTTCCCCGGCCTTGCCCTTCTCCTTTTGGGGTTCCACCTCCTCGCCGAGGGGCTTGCGGGGCTGAAGGGGCGCCGTCACCTCCTGGCCCAGGCCCTGGGGGGGCGGGCCCTCGGGGCGGGGATCCTCTTAGGGGCCCTTTCGGGAAGCGGCACCGGGGTGAGCCTCCTGGCCCTGGGGCTTCTGGAAGGGGGGGTGGTGGGCCTTGGGGGGGCGGCCCTTCTCGCCTTGGGGGCCACCGCGGGGGCGGCCTTTTGGGTGGGGCTTCTGCTCCTGCCTGGAGGGCTTGGGGGGGTGTTCCTCCTTCTCGGGCTTTTTCCCTTCCTCGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1319915-1320100 **** Predicted by CRISPRDetect 2.4 *** >NC_019386.1 Thermus oshimai JL-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1319915 37 100.0 37 ..................................... TTACGGATTTCCTTTACAACGTATGACTTGTCCTCCT 1319989 37 100.0 38 ..................................... ACGATTACCTCTTGGCCGATGGCCACTTGCTTGGCTGT 1320064 37 91.9 0 .....................CA.............G | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 97.3 38 GTTGCACGAGATGCTTCCCCGTCAGGGGATTGCGACC # Left flank : GGGCTTCTGGGCCACCCAGGGGGTGAGGACGTGCTTCTTGTGGAGGGCCTTGAGGTCCATTTGGGCTGATTTTACCCCATAGAGCAACACGGAACCCCAAGCCAAGCCGCCCCGAACCCTAAGCGCCCGCTTCCCTAAAAACCCTTGACTTTCACAAAGGAAAGCTTTGGCCCTCAAAGGCAAAATCCGAATGTATTTTTTCCATTAAGGCCAAAATGTTCTCTCCGGGAGCGGCTTCTCACCACCCTTGACCTACCGAGTCCAACGCTGGTAGCATGTTTCCAAAGCCGGGCATCCGGCGGTGGATCTTGACAATCTAGTCTCGTTCAGCACGCAAGTATGCGCATTTGGATTCTCATCGCACCTTCCTCTGCGGCTTAAGCATGGGCCTAAACCTCGCAAAAAGCCCTTTATTCGCCTTATGTATATTCCAAGCTTCATCTTTCTCACAAACCCCCTTTCAGCAAGCCTGTCCAGGACGGGGCTCTTTAGGGGGTAGA # Right flank : GGAGGCACCCCCCCGGGCCGGCCCGGGGGGTGCGGTCTTTAGGGGCTTGATTTTTTGCTGATAATGGTTTATCATTCTAAACATGAGCCGGGTTCTTGCCCTGCTGGTTCTGGCCTTTCTCCCCGCCCTAGCCCAGGTGCAGGTGGCCGCCACCACCCCCATCCTGGCGGACCTGGTGCGCCAGGTGGGGGGAGAGAGGGTGCGGGTGGCGGGCGTGGTCCCCCCGGGGGCCGACCCCCACACCTTTGAGCCCACCCCCTCCACCGCCAAGGCCCTGGCCCAGGCGAGGGTCCTCTTTGCCAACGGGCTGGGACTGGAACCCTTCCTGCCCAAGCTCCAGGCCCTCCTGCCCAAGGGGGCCCGGGTGGTGCGGCTTGGGGAGGGGGAAAAGGACCTGATCTGCGAGGAAGCCCATCGGGAGGACGGCCACGGGGAGGAGGAGCACGCCCACGGCCCCTGCGACCCCCACCTCTGGCTGGACCCCGCCTACGCCCTGCGCT # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACGAGATGCTTCCCCGTCAGGGGATTGCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //