Array 1 74888-75340 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGPS01000005.1 Pectobacterium versatile strain RMIT1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 74888 27 89.3 32 T............C-............. TCGACCCCGAAGACGTACCTATCAGTGCCAAT TA,G,T [74891,74894,74900] 74951 28 96.4 93 .............C.............. CCGATGTGGCGCTTATGCTCGGGCCAGCTCTACGTTCACTGCCGTACAGGCAGTGAACAGACCGGGTGATGTAGTGGCGGATTTCTTCATTTT 75072 28 85.7 32 C.AAG....................... AGAAGCTATCGCGGCGCGAAACGAAGCGCTTT 75132 28 96.4 32 ...........C................ TTGATATCACGCTTGAAGTAGCTGACTGGCTC 75192 28 100.0 32 ............................ TCTGACAAATCATTAGGTGATGTGAACTTTCG 75252 28 100.0 33 ............................ AATTGCTATTAGCTGGCGGATTGCTGGCATCAG 75313 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ============================================================================================= ================== 7 28 92.3 42 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCCGCCTGAAGCCGAAAAGCAGAGGCTTCCATCTGGTGACCGACGAAATACTGGCGCAGGTCACCGCACTGCGTCAGATAAAAGTCGGGCTGATGCAGGTGTTCATCAAGCACACCTCGGCGGCGCTAACGATTAACGAGAATGCCGACCCTACGGTGCGGCAGGATTTCGAGAGTTTCTTTAATCGCTTGGTGCCGGAGGATGAACCGTACTACCGCCATACGTATGAAGGTAGCGACGACATGCCCGCGCACCTGAAAGGCAGCCTGCTCGGCAACAGCCTGACGATCCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGTATCTACCTGTGCGAACACCGCAACCACGGCGGCAGCCGCTCGCTGGTTGTCACGCTCAACGGGGAATAACGCCACGAAATGCGTCGCGCCAGTGACGTATCCCGATAAAAAGCGAGCTGCCTGTACGGCAGTGAACAGGTTGCCGTGTTTGTTCAGCTTAATATTTTT # Right flank : ACGGCCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACACGCACAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 4.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-1.12, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 123299-125096 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGPS01000025.1 Pectobacterium versatile strain RMIT1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123299 29 100.0 32 ............................. CATATATGTACCTTTTGACTTGTAGATGTATT 123360 29 100.0 32 ............................. TTTAGCGTATATGAGGAAAACTAGCTTTTGCA 123421 29 100.0 32 ............................. TAGGCGGCATAGCTATAAATCAACGGGAGGGA 123482 29 100.0 32 ............................. ATATATTTTGTTTCTGAGGCTACAGGATGGCT 123543 29 96.6 32 ..........................T.. GTAGTGCTGTATATGCATACAGTGAGTCTAGT 123604 29 100.0 32 ............................. AAACGCCATCCACCTTCGATCAAGTACGCCAG 123665 29 100.0 32 ............................. GGTAAGTTTGCCCGCGCCGAACCAATATCAGC 123726 29 100.0 32 ............................. CCAGAATCCGTTAAACGTCTCCCGCACCCACA 123787 29 100.0 32 ............................. ATGAGGATGCATAATGGATAAGCCTATCATCC 123848 29 100.0 32 ............................. CCCATGTAATTTTCATAGCTCATATGAGTTCT 123909 29 100.0 32 ............................. GTCATGACGGTTGATGGCGATAGCATGTACCC 123970 29 100.0 32 ............................. TCGTCGAGGAACTGTAACGCGCCGCCGTTCCT 124031 29 100.0 32 ............................. CGAACCCGCCAACGAGTTCAATTTGTCCAGAA 124092 29 100.0 32 ............................. TGAAATGTACGCGTACGGCCTTTGACCTGAAA 124153 29 100.0 32 ............................. AAACCAAAAGAGAAAAAAATCCCGGCACCAAT 124214 29 100.0 32 ............................. AAATAGCAACACCCGCTCTTTAACATGAATGG 124275 29 100.0 32 ............................. AAATAGCGGATAGGTTTGATGTCATCTGCCTT 124336 29 100.0 32 ............................. CAGGTGTGGATATTCCATGCCACAGGTTATTA 124397 29 100.0 32 ............................. TCATTTAGCGTTCGTTTATACAAAATCGGGAA 124458 29 100.0 32 ............................. GTGTCATGCTGTACGCCCGGCACCCAGGCATT 124519 29 100.0 32 ............................. CCCTTGCGTTATAAGGGATAACGATAGCTAGT 124580 29 100.0 32 ............................. CGGGTAGTTTGCAGTTGGAAGAATATTCAATT 124641 29 100.0 32 ............................. CAGCCCCAACCAATTTAGCAATCTCTAACAGG 124702 29 100.0 32 ............................. CGCGACTGAGTGGCATCATACGTTACCGTGAC 124763 29 100.0 32 ............................. CGGATCGAATGCCGTTGGTGATGACTTTTTCG 124824 29 100.0 32 ............................. CAAAGCACGACCCCAGATCGGACATCCCCGAT 124885 29 100.0 32 ............................. CCCAGCACGGTTTCAGCGGTACCGGTTTGAAA 124946 29 100.0 32 ............................. TTCACGTTATCCGCAGTGGCCGGAGCAAGGAA 125007 29 100.0 32 ............................. GCCCGCGATTATTAGCGAGCCGAGTAGTTCAG 125068 29 93.1 0 .........................T.T. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGTAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GAATAGTAGAGGTGTAAATCATAACGGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTTCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127296-129889 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGPS01000025.1 Pectobacterium versatile strain RMIT1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127296 29 100.0 32 ............................. AATGGCGAGTGGTTGTTTAGTGCGATGCTCAA 127357 29 100.0 32 ............................. CGTTCCACCTTCGTAGATAATTGCCTCCAGCG 127418 29 100.0 32 ............................. AGTATTGCCGCCGTACTGGCACCAAAGTAACC 127479 29 100.0 32 ............................. CCACGTGCCGGACGTGGTTAAACAATCCGGTA 127540 29 100.0 32 ............................. CCGAGGCGCTGCTGCGTAAATATGCCGCAGGG 127601 29 100.0 32 ............................. CGCTTTGAAAACAATTATCTGCGCATGGAAGG 127662 29 100.0 32 ............................. CGCCAAAATGTCGCGATGATCGAGGCTGCGGC 127723 29 100.0 32 ............................. GGATGGCATGCGGATCACGTCGAGGCTGTTCA 127784 29 100.0 32 ............................. CAAAAAGAATTCGATAAACTGGCTGAATTGCT 127845 29 100.0 32 ............................. TGCGGACCGTAATCAGTCACCAGGTCGCTATA 127906 29 100.0 32 ............................. TAACGTCTGGAAGTTGGTATGACGACATAATG 127967 29 100.0 32 ............................. GATGTCCGAGTTATCACGTACAAACCGTTTGG 128028 29 100.0 32 ............................. CCACTGCTAACGCGGTGGCTTTTCTATTTGCG 128089 29 100.0 32 ............................. TCGAACGGAAACGGAATAGGCATGAGTCGCTA 128150 29 100.0 32 ............................. ATTCTTGATGAACACAGAGCGTGGGTTACCTC 128211 29 100.0 32 ............................. TCCTCGATCGTCGCAGCTTTCGGTTGTGTTGG 128272 29 100.0 32 ............................. GGTCGGAAACGTCGATTACGCGTCTGTGGGAC 128333 29 100.0 32 ............................. ACCCTAACACCGATCCGCCGGATCCGCCGGAG 128394 29 100.0 32 ............................. TGAATATCGACGCTCAGGGCTCAGTGGTGCTG 128455 29 100.0 33 ............................. ATTCGACCGCTACCCATCGTCGGGATACCACGC 128517 29 100.0 32 ............................. GGTCTATCTATAACTCTGCATCCCACTCATTT 128578 29 100.0 32 ............................. AATATGACGCGTTATAGCCTCATATCAGAGAA 128639 29 100.0 32 ............................. TTACCACTGGTATTTCATACGGGGCGTCCGGT 128700 29 100.0 32 ............................. AATAGGCAAACGCAGTACCCCAAGGGGCAAAT 128761 29 100.0 32 ............................. CCTGCTGATACCGTTACTCAGCACGTTAACCA 128822 29 96.6 33 .A........................... CGGTGCGCCGGTTGCTCTCCGGTCAGGATTTGA 128884 29 93.1 32 .A...........T............... GGCGTGACAAATTTCTCTGTCGCGTCTCACTC 128945 29 96.6 32 .A........................... CTCTCGGTGTTCTCTGGTTTCTATTGCGCCGT 129006 29 96.6 32 ...........A................. GGATGCTGAGCGCTAATCGTTTTCTGATTAAC 129067 29 82.8 32 ........T...GT...A...G....... ACTTCAACGACTGCGCCGGCGAGCTCAATATG 129128 29 93.1 33 ...........AT................ GGGAAAAAAGGCGGGGCTGGCGTTACAGTTGCA 129190 29 100.0 32 ............................. GTTTCGTCAGCATCAACGGTCGCTGGAATTTG 129251 29 96.6 32 .A........................... CGGTAGAAATGCACGCGTAACCCATCATTTAG 129312 29 96.6 32 .A........................... TTCAACTTAATTATTTAAGTTAACAGGGATGA 129373 29 100.0 32 ............................. CTGCCCCCGACATTCTGACGGCAATTAAACCC 129434 29 96.6 32 ...........................T. GGCAGTCTGGCATTCTTCTCTGGTTCATTGAA 129495 29 96.6 32 .............T............... TCAGGTGGCAGCAATACCGGGACTACCGACAG 129556 29 96.6 32 .............T............... CGACAGGCGAATTTCATTGCGCAAATCGGCAC 129617 29 96.6 32 .............T............... GGATAAGTGCGCTGATTGACGCCATCAGGGGC 129678 29 96.6 32 .............T............... GTGTTATAGGTGCCGAGCTGTTCGTCATTCAG 129739 29 96.6 32 .............T............... AAACTATTTCCGGCATGGTGGCTACAAGGGCA 129800 29 100.0 32 ............................. GTTCTGTTCACTGGCTCAAGCCCTGCGAACGG 129861 29 82.8 0 AC..........AT.............T. | ========== ====== ====== ====== ============================= ================================= ================== 43 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATGTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATCAGGGAAACGTGGTGATGGTGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTATTGCATGTTGGTCTAAATATTCCCCGCACGGGGCCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTCTGCGCCCACTGTCACGGTGAGGCACTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCCGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //