Array 1 69470-70106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045185.1 Companilactobacillus paralimentarius strain LP238 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69470 28 100.0 33 ............................ TCATTTGTTGCAACTTGGAAAAATACTCTGTCA 69531 28 100.0 33 ............................ TCACTAATGCAAAGCCAGATGTATCTAGTTTTG 69592 28 100.0 33 ............................ TCATTAAGTAAGCAATTACATCATTGTCCATTA 69653 28 100.0 33 ............................ TAGGTTATCAATTGTTACAGAATGAAAATTACA 69714 28 100.0 33 ............................ ATACCGTATTGCTGAGCCTTAGCACGGGCAAAG 69775 28 96.4 33 ....................A....... AAAGATGACCAACTTGCTGACCGAATACTAAAA 69836 28 100.0 32 ............................ TAGTGCTGATAAGTCTCTTTCAAAATTCAGAA 69896 28 100.0 33 ............................ CAGCGCCTATTGTGGCTGGTTTTGGTTATGCCG 69957 28 100.0 33 ............................ TCTTTCAATCTTGCATCATTTTCAGGCCAATTG 70018 28 100.0 33 ............................ CAGCGCCTATTGTGGCTGGTTTTGGTTATGCCG 70079 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.7 33 GAATCATCCCCATGTATATGGGGAGCAC # Left flank : GGCGAGGTCCTAGCTACCTTTACTGATCGTAAGTCCCGACTAATGATTATTCGTCGTTTACCGGGACGTGATAGTAAAGCTATGACTAAGGCAATCCTAGAGCTTAACGAGGAGTTGCGCGGCTTGGTCAAGTCAATCACCAGTGATCACGGTAAGGAATTCGCAGGCTTCAAGGAAATTGAAGCCTGCGGAATTGCCCATTATTTTGCCCACCCGTATGCGCCACATGAACGCGGAACCAACGAACGGTTGAACCGCGAGATTCGGCTACACATTCCAAAGAACCAGCCAATTGAGAGCGTTACGGACGAAGAGCTGACTATGATCTCAAAGTACTTAAACTGGCGTCCCCGGAAATGTTTAGGGTGGAAAACGCCACTCCAAGTCTTCTTTGGTGACTTGTCCGAAAAATTCGATTAATTGTTGCAATCTACCTTAAATATAAAATAATTGGTTTCCTATTTCATACACTAACCATTAAATTATAACCATATTTAATA # Right flank : CACTTAAAAAAAGCCGTTACATAGGCATTTTCAAATTACAAGGTTGCCGTTTTTTATTAACTTCTCTGCTAAAGACAACGTAGCTTGAGCATCAGATAATGCATGATGTGGATCTAAATTCTCTATCTGATATGCCTCCAAGACAGTTGTTAAACGATAGTTATCTAAAAACTCCTGAGTTGTTTTTACTATTGGCATAAGATCGTGGGTAGAGTTAGTAAATTCGGTTTTTCCAACTTTCCGCAATGCTTCCGTTAAAAACCCTTCATCAAATTCAAGATTATAACCGATGATGACTGAATCCTTAACAAAATCAGACAATGCCTCTAATCCTAATGAAAGCTCAACACCCTGTTTTTGCAACTGTTCTGAAGTGATTCCGGTAAGTTCAGTAATTTTGGATGGTACTAAATCCACACTTCGAATTAATTTTTCAAATTGCAGTAATTGTCCGTCGGGCATTATCTTGGCTGCTCCAATTGAAATAATTTCTGCTTTAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCATCCCCATGTATATGGGGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 80629-79809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045185.1 Companilactobacillus paralimentarius strain LP238 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80628 28 100.0 33 ............................ TGTCAAGGTTAATATTCGCTATTTTTGTCATTT 80567 28 100.0 33 ............................ CATTAGCCGAGGATACTCCTGTTAGTACGGAAG 80506 28 100.0 33 ............................ CTTTTGTGCTTGGATATCATCTACTTCATTATT 80445 28 100.0 33 ............................ CGTGTCCAGCTTGTATTTGTTTTTTCATCATGG 80384 28 100.0 33 ............................ CTAAGTCGCAGTTACCATTCACAACGTTGTAAT 80323 28 100.0 33 ............................ CTAAGTCGCAGTTACCATTCACAACGTTGTAAT 80262 28 100.0 33 ............................ CAAACTCGTTCAATACTTTCATCCCCTTTATAA 80201 28 100.0 33 ............................ TGTGTGGACCTTGGTTTAAATAGGTGGTCCTTC 80140 28 100.0 33 ............................ TACAAGCATGAACATGTTTATAAATTAGTGAAA 80079 28 100.0 33 ............................ TAATGACGAACGGTTAGGCGATTGGGAACCCGA 80018 28 100.0 33 ............................ TGTGTGGACCTTGGTTTAAATAGGTGGTCCTTC 79957 28 100.0 33 ............................ CGTTGTGAAGCAATTCCTCCACACCTGTTACGC 79896 28 100.0 33 ............................ TGGTTCGGCCAAGCATCCACGGCCTAAGTATAA 79835 27 75.0 0 ..GT.......A..C.....-...G..T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.2 33 GTACTCCCCATGTATATGGGGATGATTC # Left flank : TATTTGGTTCCTTAGGGGATAGGGATACTTTCAAAAAGTGTTCATTGATGATCAACTACGCAAGTGTGAGACGAGAGCAGCAGCAATTATACAGCCACGGTGGTCGTTTATACTTGATACAAGCACAGGCTGAAACGGTTGAGGATGCTCAAACAAAAGTTTATCAAGAACTTGAAAAAATGGATCAAACAAATATTTTTTATCGACGAGATATTGGTAAGAACTCCATTTAGTTCAAAAAGGTAGAAGTAAGATTTCGTTTGAAATATTACTTCTACCTTTTTATTTGAATCGATATCTTAGAATTTTGAGTTTTTGAAAAATTTATAGACATAGATATTTAGAGTATTTTTTATTGGTCATTGAAACTATTGAAAATAGCGTTGCATAGAACGAAAAAGAAAGTTATTCTTTAAGAAATTGGTAATCTTATTGGACAAGTTAATAAAAATAAGTGGTTTTCTAATTTTAAAATGTTGATCTAACGGTCTTTTCTTAGT # Right flank : TAATTAGAGCCAAGAGCTCTTTTTTTATCATAATTTTTTCAGAAGTGAAATTGTACCGTAAATAGATTTAGTCATGAGCTAATTTGTAATGAGGTTAGATATTAGAAAGTAAATTTTCATTTCTTACAAGTCTAACTATATTAATAGTGGCATAATAAAGATAACGATTACATTGCCGTTTGCGTAGATAAATTTGAAAGATAATCTCTCTAAAAAGGGGAAATATTAAATGTCAGTAAAATTAACGAGTAGAGAAACTAGTTTATGGGCAAAAAAACATGTAGATGATGGGGAAATGTTGTGGCTTCCATTAGTTGCCCACTTAGTAGATTGCAGTCATGTGATGAATTGGCTTTTTTATCATTGGTTAAATGCCGGTCAAAGAGAATTGTTAACTCAGTCGGTTTCTGAAGAAGACATGCAAAAGCTAATTAAATTTTTGGGATTCTTTCATGATATTGGGAAAGCCACACCGGCTTTTCAAACAAAAAAATCTTACG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACTCCCCATGTATATGGGGATGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 1881316-1881648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045185.1 Companilactobacillus paralimentarius strain LP238 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1881316 28 100.0 33 ............................ AGACTGGGTTAAATAGTGAATTGACATACAGTA 1881377 28 100.0 33 ............................ TATAGTTTTGTATGCTATCACCTCCCTAAAATC 1881438 28 100.0 34 ............................ TGTCAAAGAAGACGTAATCAAGTTTATCAAAGAA 1881500 28 100.0 33 ............................ TGGCAGCCATCGTCACTGTCTTGCCCGAACCGG 1881561 28 100.0 33 ............................ TACCAAAGAGCCACATGCACCACTGTCCTCTGA 1881622 27 82.1 0 ...T..........T...A..-.....T | ========== ====== ====== ====== ============================ ================================== ================== 6 28 97.0 33 GTGCTCCCCATATACATGGGGATGATTC # Left flank : AAATGGATACTGGTAGGTGGATTCCGATAAATGATAGTGGAGCTATGTTGAATAGTGCAGGATTTAGTAAATTAGGAAATAATTCTCTTACTGAATTTATAGGACCAGGAAAATGGTTGATGAATGCAAATAGAGACGGCCTTAAATCAGGTGTCTATTCTGGAAAAATAACGTGGAGCGCTATTGATGGAATTCCTAATAATTAATAAGTGGACTTGAAAATATTATAAAAGCGTATAGGTAAGTGCTATTACTAGTATTGAGAGTCTGGGAAAAATTACAAATAAAAGAAGATTCAGAAATTGCTTTGATTTCTGAATCTTCTTTTTTGTGTACATGAATTTAGAAAGTTTTTGTTAGTTATTGAAAACTTGAAATAGAGTTGCTTACAATAGAAGAGAAAGTTATGCTTTAAGAGATTGATGAACTTACTTTTTCAAGTTAATAAAAATAAGTGGATTTCTAATTTTAAAGTGTTGATATATCAGTCTTTTCTTAGT # Right flank : TTCAAATAAAAAAAGATGCCTATGTCAAAACACTGAATGCTTTGATATGGGCGTCTTTTATTGTGTAATGTGTCGTTGATGGAAAATACCGAAGCCTTTAATTGCGAGACTGGAGATACCGACTGACATGACAGCTAGTAGGAAAGAAATTAAATCATTTAAGGCAAAGTTTCCTAAACAAACTAATCCATCAATAATGAATAGACTGATATATTTATCTACACCGAAGTTTTTATGAATAATCATTGGGGGAACTGTTGTCCCACCACTAGACATGTTGAGAGTATAAAGAATAGCTAAACCAATTCCAAAAATGATACTTCCTACTATAATAGAGATTACTCGATTATTAGGAATTAAATTGTAAACCGGTGTGATATATAGCAAGAGGGGAAGCATGAAACTTCCAATTGCTAATTTAATGGTGGTTTGTCGATCTAAATGTATGTAAGCCAGTACTAACATCACAATATTTATGGAAAGAACCGAGATGAATGTTG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATATACATGGGGATGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //