Array 1 285575-283490 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134400.1 Listeria monocytogenes strain NCTC7974 plasmid 3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 285574 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 285508 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 285442 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 285376 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 285310 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 285243 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 285177 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 285111 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 285045 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 284979 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 284913 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 284847 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 284781 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 284715 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 284649 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 284583 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 284517 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 284451 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 284385 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 284319 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 284253 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 284187 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 284120 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 284054 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 283988 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 283922 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 283856 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 283789 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 283723 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 283657 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 283591 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 283525 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 473541-474217 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134402.1 Listeria monocytogenes strain NCTC7974 plasmid 5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 473541 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 473606 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 473671 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 473735 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 473801 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 473864 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 473928 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 473993 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 474057 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 474123 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [474146] 474189 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //