Array 1 68573-69353 **** Predicted by CRISPRDetect 2.4 *** >NZ_AEKH01000016.1 Lactobacillus iners LEAF 2053A-b contig00018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================= ================== 68573 29 96.6 33 ............................C ACGGAAACCGCAAAGCTTGTAGCGAACTGGTGG 68635 29 100.0 32 ............................. TGATACTACAGTATCCAACGCAAACAACAGAT 68696 29 96.6 32 ............................C GAAGAAAACAATCAATTTTTGGAAAGCGGGGA 68757 29 100.0 32 ............................. CTTTCGCTCCAGTAGTAAAATACTTCATGCTT 68818 29 100.0 32 ............................. AGCCCCATTGCTACTGCTTTTTGTGTAGGCAT 68879 29 100.0 32 ............................. GTTCCAGGGAGGAACAAATGTTCCGAGGGTGA G [68901] 68941 29 100.0 32 ............................. GATTCAGTACCATTTGATACAATCACAACAAC 69002 29 100.0 32 ............................. CGCCGTTTACCCAACCTTGGTCTGTTTGATAC 69063 29 100.0 32 ............................. TCACCTGCTATATGGTGTGCTTCAATTTGTCG 69124 29 100.0 32 ............................. AGAAAAGGAAATTAACCTTTAAATTTCTTTTC 69185 29 82.8 109 .....................AC...TTA AAAACACTTCCATATTTTTCTTTACAAAATTTAGGCAATATATCATAATATGTTTAATTTAGGAGTAAGCATGTTGTTTTTAGTTTTGGCTTGCTTTTTTCTTAATATT T [69205] 69324 29 69.0 0 ...C..T...T.......T..A.A..AAA | T [69341] ========== ====== ====== ====== ============================= ============================================================================================================= ================== 12 29 95.4 39 GTATTTCCCGCACATGCGGGGGTGATCCT # Left flank : GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAATTAAAAAATGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTGTGCACATTTATTGGAGATAAAGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTCATCAATGAGGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATACGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTACAAGTTGGATACAGTATTAAGTGAATATGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACGACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATTGAAAATTCAAAAGTGAATGAAAAAATGGTATCCTTAAATTGCAGGTAGCGTCATAGATGGATCTTTTAGT # Right flank : AGTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAGCTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCGATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAATATGGTCAAGTCCCTTTGACAGAAGAAGAGAAAAAAATTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGCTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCTAAATCAGTGCTTTTTTTGTGATTTAAAATTTTTTATTTAGAATTTTTAGTTAATTTATTTTTGATAGATAATATGATGATAGGCAAAATTGAAATAGCAATGATAGCAATGATCAGCAAGGAAAAATGATGCTGTACAGCAGGAATATTACCGAATAAAAAGCCACAGATTGAAAAT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //