Array 1 1464-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOH010000048.1 [Clostridium] scindens strain DFI.1.60 KDEGIMHP_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1463 33 100.0 34 ................................. GTCCTTATGTGCCGCTGTAGATTTCTGGATACTG 1396 33 100.0 35 ................................. CTCTATTCCGGCTACCGGGCGAACTCCCAGTAATG 1328 33 100.0 33 ................................. TACTACAGTAGTTAGCCATAGAGGCTTGACTAT 1262 33 100.0 35 ................................. TCGCACAACTTTCGCTCCTGGGAAGTGTGGCTGAA 1194 33 100.0 33 ................................. TACTTCCTGCTCGAATTCCTTTACCATATTCTC 1128 33 100.0 35 ................................. CCTGACTCCCTCCCCGTATACTATTACCGTGCCCG 1060 33 100.0 34 ................................. TCCAGTATCCCCCATCCCTGGTCCATATCTGGAT 993 33 100.0 35 ................................. ACCCAATAAGACACAGGTAGCATGTCAAGCACAGG 925 33 100.0 33 ................................. TCAGATATGTGGATATCTTCACAAACTTATTCA 859 33 100.0 34 ................................. CAGGGTAGAGAGGGCGATCAGGCACGCATTCGCG 792 33 100.0 34 ................................. GCACAGCATTACGTGTGCGAGGGAGAGACTCAGT 725 33 100.0 34 ................................. TCCACGGATGTTGTACCACTGCTCCGGTTCTACC 658 33 100.0 35 ................................. TCAAAATCAATCGTGACATTGTTGATCAGCACATC 590 33 100.0 33 ................................. ATTTATGTTGCACTCTGGGGGCTCGTCCCCTTG 524 33 100.0 33 ................................. ATTTCCCTGCTGTCCCCATGGGAAGGAATATCC 458 33 100.0 35 ................................. AGACTCAGAGAAGAAGCGGGAGGCTTTCCGGGAAG 390 33 100.0 34 ................................. CATGATCTGGCAGGGTATATCACTAAGACGCCGG 323 33 100.0 33 ................................. TGAGGATAGGAACAGATTCACAGGGTATAAGTA 257 33 100.0 33 ................................. TGAATACATCCCCTCGATCTCTTCGAGTATCAG 191 33 100.0 33 ................................. GATTGGAAGCACTGCTTCCTTTCCTGCTTCTCC 125 33 100.0 33 ................................. GATAAAGGCAATGTGCAGACGGCCACGCAGATA 59 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 22 33 100.0 34 GTCGTTCCCTACATTGGGAACGTGGATTGAAAT # Left flank : ACAAGTTAGGCCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATTACAAGATATTCTGACGCAGGGGTAGTATGCCTCTGCGTCTTTTCGATATTGAGGAAAATAAATTTAATAAAGTTCAGCAAGAATAGCAGTCAGCAACGTAATGTACTTAAGAAAATTCGCAATCGAAGCCATTCTTGAAGCCTTAGTTATCAGAAAGGCTTATCAAAGTCTTGGGAAAAATAAAAAGTAGTAGAGGAAATTTGAAGATTAGATAGCAATTTGGTAGTGCGAATATGAAGTATACATAAAAATCCCGGGAGATTCGCACCAAAAAAGTTGCACAAAAATTGAGTATTGTATTACAATATAGATTAAAGAGGAAAAGATATTAAAAGAAAACCGTAATATGTTACAAATATAATGTTGTTTAAGATTGATATTTGGATATGTTTGCT # Right flank : TCAATGGAATGGGGATTGATGTAGACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTACATTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 254551-253725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOH010000001.1 [Clostridium] scindens strain DFI.1.60 KDEGIMHP_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 254550 32 100.0 35 ................................ ATCCTCCAATGCTTGACAACAATGATCCCGTCATC 254483 32 100.0 34 ................................ CGCAATCATCTGCATTTTAAAACCGCACACAGGG 254417 32 100.0 34 ................................ TGTTTTACCCTCCTTGATTTCCTCTATTCCGGCT 254351 32 100.0 35 ................................ TCTGCCCGATCGCTCTCCGTCTCAGCGGCGGATAT 254284 32 100.0 35 ................................ CTCAGATCAATCAGGTGTTTCTTGCAATTGTTGTA 254217 32 100.0 33 ................................ ACTGACATCCTCCTTGTCATCTTTCGTAATTTC 254152 32 100.0 34 ................................ TGAAACCATGCTTTCAGCTGCGCAAGGCTGTTGG 254086 32 100.0 35 ................................ TCGTTGGATTTGACACAAGAAGAATTAGAGCGGCT 254019 32 100.0 34 ................................ AGGTATGCGACTGCTGCCATCTTATGTTTTTCGC 253953 32 96.9 34 .............C.................. TCGTCATCCCATCCCATCTGCGAAAGTTCCAGGA 253887 32 100.0 34 ................................ ATCTAAGAACTGTTTAATAGCAGCATTGCATTCT 253821 32 96.9 33 .............C.................. CTGCTCCTGGCAGTCGCACTGCTCGCCAGGATC 253756 32 71.9 0 ....A.....ACA........CAA....G.T. | ========== ====== ====== ====== ================================ =================================== ================== 13 32 97.4 34 GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Left flank : GGATGCATATCCGCCATTTTTATGGAAGTGAGGTGACATTATGCTGGTATTGATCACATATGACGTTAATACAGAGACAGCGGCCGGAAGAGCAAGACTAAGGAAGGTTGCCAAGCAATGTGTCAATTATGGAAGGCGTGTTCAGAACTCGGTCTTTGAATGTATTTTGGACAATGCACAGTGTGTAATGCTGAAATCTACTTTGATGGAAATTATTGATGAAGAAGTGGATAGTTTGAGATTTTATTATCTGGGAAATAAATACAAGACAAAAGTAGAGCATGTGGGAGTCGATAAAGGGATTGCTGTGGATGAAACATTGATTCTGTAGTGCGAATGTGAAGCACACATGAAAATCCCGGGAGATTCGCACCAAAAAAGTTGCACAAAAACTGTAAGTTATATTAGGATATTAATTAAATATCAAATCATATCTAAAGAAAATGTAATTTACTACAAAACATATTACTATTTTCTTTTGAAATTTGGATATATTTGCT # Right flank : ATTACCATAGTAGATATAGGCGCCCCTGTACAAGGTTGATCCACTTGTGAGAATCAGAATATAGATACCTCTTAATGGGCATAATAGTTTGATTGTTTACCGCAACAAAAAGCAAGGCCTATTTTAAACAAACCATACTACGAAGTTATTAAAAATTAACTAACATGTTTAATTCATAATGATACATTTAAAGGGGAATAAAAGTGATTTTACGCAGAAATGCGAAAAGATTTATCAGTTTTGCATATATAGAGCAAATGCCCATAGTTCAGGGCGGCGGAGATTTTTCTCCGCCGCCCTGATTACAATACCAAGCCAAGCACCTACATCGCAGCATTAATTGCAGCCACAGCGCCATCTGCCACGGCTGTTGCAGCCTGGCGTACCTGCTTGACGCGGATATCGCCAGCAGCATATACGCCGGGAATGGAGGTTTCCATTTTTTCATTCACCGGAATATATCCGTTGTCTAACTTAAGTTCCGTATATAATTCGGTATT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : NA // Array 1 7337-6366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCOH010000052.1 [Clostridium] scindens strain DFI.1.60 KDEGIMHP_52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 7336 33 100.0 34 ................................. GGATCATCTGGAACTTGAGACATACCAGGGCTGC 7269 33 100.0 33 ................................. AAAGAGCAAGAAAGTCAGGCAGACAAAAACTCC 7203 33 100.0 34 ................................. GGCTGCCGGCATGCAGGCCATGCAGGGCCTGACA 7136 33 100.0 33 ................................. ATCCAGTGTTATTTCGCCTCTGCCACAAATACC 7070 33 100.0 35 ................................. TGCGCTCATGCACATCGGCTCGCCTGTCTCAGCAT 7002 33 100.0 35 ................................. CTGCACTCAATCCCATTTGCTGGAGACGAGCTGCA 6934 33 100.0 36 ................................. ATGCCAAGCGTCTTTCGCAGCTTGTGTGGATATACG 6865 33 100.0 33 ................................. CGCTTGAAGGATGGAATACTGATCGTCTTGGAT 6799 33 100.0 33 ................................. CATAATAGATTGCAATATTTCATAAAAATACAA 6733 33 100.0 35 ................................. GGATATTGCTGATAAGTAGACTTACAAGCATGAAC 6665 33 100.0 35 ................................. CATCATTCGTGATTTGAAAATGCGCCAGCGCCATT 6597 33 100.0 33 ................................. TTATCCAAGCGTAGACGATATATGCCTGATCCT 6531 33 97.0 33 .....T........................... GTGTCATTAAGATAGGCAAAGTTTATAGAATCC 6465 33 100.0 34 ................................. TTGGATATGATCTATTAGGTCCTGATAGTTTTTC 6398 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 99.8 34 GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Left flank : TAAAAAGCGCCTCTAAAAAATATAAAGATTGTGAAAAGGCTTATGGGTTTGACATGGAAATTCCCAATAGAGAAATGATTGTAAGAAATGGAAAAGAAGTAGAACTGCCTGCCAAGGGGCCATATTCTGATGAGAAGACCAAGCCGTGGAGTAAATGGTCGAAAGAAGAATATGATGATTTCCAAAAAGAATTAAAAAAGAGGATAAAAGATAAATTTCCAGGAACGTTTCCGATAGAGTGGGAAGGATCAGCCTGGATCGAAATAGCGAAAAAGCGGAAATAATTGTGGGCTTGGGACTGGTTTGAAGAAATTGGAAATATGGTTCAGGTGCGAATGGTAAGTGCACATAAAATGCGTGGGGGATTCGCACCTGGAAAAAGGGGTTAATTTGGAGAAAAGGTTAGAAAAAATTAATTTTAAAGAAGGATTTGCTTGAGTTATTGTGGGTTTTGTGTGTAATATGTAAGTGGGCAAGAGGTATTTTTGTGCGTTTTTGCT # Right flank : TTTTTGGCTGTTACGGAATGAGGATCGGGATAGCTTCCCTCTCGAGGTAAAGTGGATTGAAATTCCTGGTAACTGGTGCCATATGAAAAAGATGTTAATGAACTTCGCGGCCAATACATGATATATCCTAAAATACATAAAATCCTTTGTGAAAAAGGTTATGCTGTAAGCATTGCTTCCCTTAAGATTATTATGCAAAAGGAAAGAGCACGGATGTATGAGCATAGGAAGAAAGCAAGGAACAGTCTAAATTTATTCAGAGAAAATCTTTATGTCAATTAATTTATAAAAAATATAGAAGATGTTATAACGATACCTCAAAACAATATGAAGAAGTATTGAAAGAATATCCTCAACTAGGACAAATATATTCTTTGGTTAAAGATTTTTACAGTGTGATTTTTTCCAAAAAGCCAGAAATATTAGATGACTGGATAGAGTTTGCTCAAAAATGTGATATACCTGAATTACAGACATTTCTTGAAGGATCCTTTCGAGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCCTCTGCGAGGAGGGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //