Array 1 41632-39406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKN010000002.1 Escherichia coli strain EC_1 Escherichia_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41631 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 41570 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 41509 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 41448 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 41387 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 41326 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 41265 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 41204 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 41143 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 41082 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 41021 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 40960 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 40899 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 40838 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 40777 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 40716 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 40655 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 40594 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 40532 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 40471 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 40410 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 40349 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 40288 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 40227 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 40166 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 40105 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 40044 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 39983 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 39922 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 39861 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 39800 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 39739 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 39678 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 39617 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39556 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39495 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39434 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69131-67333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADCKN010000002.1 Escherichia coli strain EC_1 Escherichia_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 69130 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 69069 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 69008 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 68947 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 68886 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 68825 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 68764 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 68703 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 68642 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 68581 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 68520 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 68459 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 68398 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 68337 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 68276 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 68215 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 68154 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 68093 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 68032 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 67971 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 67910 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 67849 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 67788 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 67727 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 67666 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 67605 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 67544 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 67483 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 67422 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 67361 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //