Array 1 3517540-3519307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012580.1 Pseudomonas aeruginosa strain PA_D9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3517540 28 100.0 32 ............................ AAGAAGAGGGGCGCTGCCTGATTCAGGAGTGC 3517600 28 100.0 32 ............................ CCCTCAAGTCGAAGCGCTCCATCGAGCAGAAC 3517660 28 100.0 32 ............................ ACCAATGGACCAGCAATCGAACTCAAGAACGA 3517720 28 100.0 32 ............................ TGGCGGCATACCGTCGAGGACTGAAGCCTGAC 3517780 28 100.0 32 ............................ TTATCCATCGCTGCGCGCCCTCCTCGGCTCGT 3517840 28 100.0 32 ............................ ATGTCGCGTCGTCGATGTGCTTTGTGGGCATC 3517900 28 100.0 32 ............................ GGTGTCCCGGGCACCCTGCTGGACCTGTTCAC 3517960 28 100.0 32 ............................ TGGCCCGAACCCGCCTGCGCCTACAACGCGAT 3518020 28 100.0 32 ............................ CCACCATGTCGGCGGTGATCGTCACCGGCACC 3518080 28 100.0 32 ............................ AACTGGTCGTGGCGCGGGATCACCGACCGACG 3518140 28 100.0 32 ............................ AGATCACCGAGCGCTATTCGGAGCCGGCCGAA 3518200 28 100.0 32 ............................ TCTTCGCGTCCCTGGCCTTGGCTCGATACAGA 3518260 28 100.0 32 ............................ ACCGAATCCGCGACTCGTACCGAGTCGCAAAC 3518320 28 100.0 32 ............................ GGGTGGCGGAACCGACTGCCGAATATCACTCC 3518380 28 100.0 32 ............................ CTCTCCTGAGCGCTGAGGATGCAAGAGCCCGC 3518440 28 100.0 32 ............................ TTCCGCCAGTTGCCGAAGCGCCCGAAATAGAG 3518500 28 100.0 32 ............................ TGAACAACCCGGCGCTGCGCGACTATCTGCCG 3518560 28 100.0 32 ............................ GGCAAGCCATTGATCAGCAGGCCGGTATTCGG 3518620 28 100.0 32 ............................ TATGCCGCCCAGCGTGCCGCCCAGGGCGCCGC 3518680 28 100.0 32 ............................ ACGAACAGCGCTGCGAACTCGCCAAGGTCTGG 3518740 28 100.0 32 ............................ TATCGAAGAGTGATCTGCGCTGCTGTGGCGCA 3518800 28 100.0 32 ............................ ATGGTGCTGTGGGAGCGTGGCAGCGAGTCGCT 3518860 28 100.0 32 ............................ ATAGAGGATCAGATAGCGCCCGACATGCCCGG 3518920 28 100.0 32 ............................ TCGTAATCATTGAAGCCCCGGGCAAGCTGAAA 3518980 28 100.0 32 ............................ ATGGGGTCTACATCAGCGATGCGGCTCTGTCC 3519040 28 100.0 32 ............................ ACTTGCAGAAGCCCCAGGACTTGAAGCCACTG 3519100 28 96.4 32 C........................... ATCCGTCACCGGAATTTGCGCGTTGGCCGTGC 3519160 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 3519220 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 3519280 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAACTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3528390-3527822 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012580.1 Pseudomonas aeruginosa strain PA_D9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3528389 28 100.0 32 ............................ AGGTCGAGCAGCCGAACAAGTTCGGGTTGATC 3528329 28 100.0 32 ............................ ACGTCGAGAAAGTGCCGCCCTTCCTGTACGAA 3528269 28 100.0 32 ............................ CTGACGATCTGGCCGACCGGCTGAAGTCTGCC 3528209 28 100.0 32 ............................ AGCGCCTGGACAATGCGCAGCCCAGGCGCTGG 3528149 28 100.0 32 ............................ AGCATGGGAAACCCGTCAAGGCCCGGATACTG 3528089 28 100.0 32 ............................ TGAAGGCGTATCTCAAACACACCGAGTTTCAG 3528029 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 3527969 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 3527909 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 3527849 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTCTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //