Array 1 43007-42774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTR01000020.1 Campylobacter jejuni subsp. jejuni strain C2-5524 contig020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43006 36 97.2 30 T................................... TTACTGATATTAAAATTAACTCCATAATTT 42940 36 91.7 29 ..............................A...TA ATAAAGCTAATGCAAAAGTTGAAAACAAA 42875 36 100.0 30 .................................... CTATTTTGGTGTAAAAAGTAGCCCATTTTG 42809 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 97.2 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATTATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAGCCTAAAGACTATATTTGCAAAGCCTTCTTACAAGGAAGCTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAACATAAAGTTTGAAAATGGACGCATTTTAGCTAATCTTGAAGGTAAAAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAATTTCAAATTTGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTAGGG # Right flank : AGATATTTACCAGATAATGAAAATTTCAGGGTTTTTTAATAAAAATAGCAAAAATTATGCTATAATCTCATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCTCTAAAACCGCTTTTAAAATTCAAATAAATTTTACTGGTGATATTTTTCTTGTTTTTTGTTTATTTGAATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCGTTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCGGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGCAGCATAAAATAACCTAATTTTATAAGATTGTTTCTAAATTTACTTGC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.79%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1064-1242 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTR01000033.1 Campylobacter jejuni subsp. jejuni strain C2-5524 contig033, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 1064 29 100.0 46 ............................. TGCTTTTGCTTTGTAAAACATATATTCCATATTTTCAACATTACCA 1139 29 100.0 46 ............................. ATTTTCACATCCATAAAACATAAATTTCATGTTTGTCACTTTACTC 1214 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================== ================== 3 29 100.0 46 ACATCCCATTTATCTAATGGTTGATTGAA # Left flank : TGTTTTCAACATTACCAACATCCCACTTATCTAATGGTTGATTGAAATTTCCACATCCATAAAACATACCTTTCATACTTTTTACTTTACCAACATCCCACTCATCTAATGGTTGATTGAAATTTCCACATCCATAAAACATACCTTTCATACTTTTTACTTTACTAACATTCCAAGATTGTATATTATGATTAAAATACTTTGCATCTTCAAAGCAAGAATCCATGTTTGTAACCTTGCTCACATCCCAAGTTTCAATTCCACTAAAATCTTTTCGTTTGCTTTTTTTAAATAGGTTCCTAAAATTTGTAATATTACTAATATCAATATCACCTAAATAAATCTTTTTATCTTCGACTAATTCTACAAGCTCGGCTTTGTCTTTTGGAATATGTCTAATACCCTTGCTTTTTGCGATCTTACCTGTAACATTACTTATATCCCACTTAGTTAATTTTTTACAACCTTCAAACATAGAACTCATATTTTCAACATTACCA # Right flank : AATTTTCACATCCATAAAACATACTTTCCATACTTTTTACTTTACTAACATTCCAAGATTGTATATTATGATTAAAATACTTTGCATCTTCAAAGCAAGAATCCATGTTTGTAACCTTGCTCACATTCCAAGTTTCAATTCCACTAAAATCTTTTCGTTTGCTTTTTTTAAATAGGTTCCTAAAATTTGTAATATTACTAATATCAATATCACCTAAATAAATATTTCTATTTTTGACTAATTTTACAAGCTCGGCTTTGTTTTTTGGAGTATGTCTAATACCCTTGCTTTTTGTGACTTTAAAAAGTCCATCAAGTGATTTTTTCTTGCTTTTTGCTGCATTTAATCTTGAAAGTATATTAAAAAGATCATATTCATCGCTATCTTCTATACTTCTGCCTGCGTACACTGCTTTATCATCCCAATACTCTTGCTCTAAATTGCTAAGATAAGCTTCTAGTTCGTCTAGTGTGTCTTGTGGGATATTTGCACCCTTATCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACATCCCATTTATCTAATGGTTGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //