Array 1 53334-53032 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOA02000112.1 Aggregatibacter actinomycetemcomitans D17P-3 contig00160, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 53333 32 100.0 36 ................................ TTTATAAACTAAACAAAAAAAAGGTGAATACGATGT 53265 32 100.0 36 ................................ CCGTCCTATAGCATTACAAAAACTGACAGGTTACTA 53197 32 100.0 35 ................................ ATATTACCGAGTGACGGAAACTCCAGAAGAAATTT 53130 32 100.0 35 ................................ ATAGAAGTCAATTAATACACCAGACGGTCTAGGTA 53063 32 84.4 0 .T.....T.........A..A....C...... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 96.9 36 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATCAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : TACTTGGCATGCGTTTTTTATGGGTATTTAACCGATTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTGCCCTGCACGATTTTATACAATCCTTTTTCAATATTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCATTTTTTCTCTCATAAAACAAAAGCTGAACCTTTCCGAAGATCCAGCTTTTCTTTTATCTATTTATTACGCTAATTCAGCGCGTAATTTTTTCGTGACGTCAACCATTACTTTCAGTTGTTCTAGGGTTTCTTTCCAACCGCGGGTTTTTAAACCACAGTCAGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCGATGTCGTTCGGGTAT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 34303-35267 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOA02000065.1 Aggregatibacter actinomycetemcomitans D17P-3 contig00071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 34303 33 97.0 34 ................................G GCGCTATATTTTTTACTAACAATATCCCAATTAT 34370 33 97.0 33 ................................A AATAATCAATTAAAAACAAAATTGTCGAATATT 34436 33 97.0 35 ................................G TCTAGAACAACAAAGCGCTCGTACCGCACGCACAT 34504 33 100.0 34 ................................. TTTTTAGCTTTATGTTTTGCCCAAACGTCTTTTA 34571 33 100.0 32 ................................. CCGCTCTTAAGTTAGTAATGGTGTTTGATTGG 34636 33 100.0 35 ................................. AAGCGCAATTGGTATTTATCAAGCCAATCAGTTCC 34704 33 97.0 33 ................................A AAGGCTTGATTAAAACTCAGTTTGCCTTGGCAA 34770 33 97.0 34 ................................C TTATCCGTCTACTTTAGCTTGCGAAGATGAAGTA 34837 33 97.0 34 ................................A CACCTCAAATTCAGCTTTTAACTAACAAGGAAAC 34904 33 100.0 33 ................................. AAGATTAGTAGATGGATTTTATGAACAAGCAAT 34970 33 97.0 34 ................................C CAATATTTGCATTCTTTGCCCTTGCATAACTTAG 35037 33 100.0 33 ................................. ACTGATACGACAATTACTGTAAATAATCTTGTT 35103 33 97.0 33 ................................C TTATGTAGGTTATATATTAGCACCTGTTGCTGC 35169 33 97.0 33 ................................A CTACCGGCACCTGGAATTGGTTAGCCAATACCC 35235 33 78.8 0 .......T.....CA.....C...T......TA | ========== ====== ====== ====== ================================= =================================== ================== 15 33 96.8 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Left flank : GTTTTCCCATGCGCAAGCTGCAAAACACGCTCTATATCACCACTCAGGGCAGTTATCTGCATAAGTAGCGGGAAACGCTGGTGGTGGAGCAGGAAAGGAAGAAAGTGGCGCAACTGCCGGTGCATTCCATCGGGCATATTTTCTGTTTCGGTAATGTGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCATCTAGGTAGTAAATGGCGTCGCAAAATAGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCTGAGTTCTCATCAAATTCCTGTTAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTTATTTGTATAACGAAGATATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : AGGCGCTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGTTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAAGCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGGTTCGGACAGCGGCGGCGGTGCCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCATTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGGTTGATATTTACGCCGTGTCACTC # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 12103-178 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOA02000030.1 Aggregatibacter actinomycetemcomitans D17P-3 contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12102 28 100.0 32 ............................ AAAAATATAATCCGCCTGTGAGCGTGCTAATG 12042 28 100.0 32 ............................ TTTATCTGTCACGTCTACACACAAAGTATCCT 11982 28 100.0 32 ............................ TTGTTCATTACAAGATTTCATATATGATACAA 11922 28 100.0 32 ............................ TGAGATTGTTACAATGAGTATTTGCACAAATA 11862 28 100.0 32 ............................ TATAGAAATACCTTTCAATGGTGCAATTAAGT 11802 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGACAGAAATTTTAA 11742 28 100.0 32 ............................ ACCACTCACAGACATACCGGTAACAGTACCTT 11682 28 100.0 32 ............................ ATTTTATTTCTCCAACATTTTATCGACTAAAT 11622 28 100.0 32 ............................ TTTATATGTCGGTGAAAAAATGATTTCAATTA 11562 28 100.0 32 ............................ ATGCCATCTCAATTAGTACAACGTCAAGGCGT 11502 28 100.0 32 ............................ AAAATTCATAGAAATTATATGATTAATTAGTA 11442 28 100.0 32 ............................ ATATCCAACAATGCTTCTTTCATAACTTGAGC 11382 28 100.0 32 ............................ ACAATCAGTTCTAATAATGAACTATGTGCAAA 11322 28 100.0 32 ............................ ATTTTGCATTAGCCAAGCTGACCTGCCAGTTT 11262 28 100.0 32 ............................ TACATACAGAGGGGTAACTAGTTTATTGTTTA 11202 28 100.0 32 ............................ TAAAACAACATGAAAAGTAACATGATGAAATG 11142 28 100.0 32 ............................ AAGAGGTGCATTAGGCCAGACGGAAAGTAGTT 11082 28 100.0 32 ............................ TGTGTGATTAAAGGCAGTTTTGAGAGAAGTTA 11022 28 100.0 32 ............................ TTACATAAGAAGGAGCGCTATTTTTATTATTT 10962 28 100.0 32 ............................ AAAAAAAAGATAGACCTAATTTTTCTTCATAT 10902 28 100.0 32 ............................ TCTAAACCCGCACCATTACTAAACTTATGCCG 10842 28 100.0 32 ............................ CGTGAAAATTTGATATTTTCGAGAACTCTCTA 10782 28 100.0 32 ............................ ATAAGGAAAAATACTATGAAAAATTTATTTAA 10722 28 100.0 32 ............................ ATGAAATAAGTCGACAAATTTTTCACCATTTG 10662 28 100.0 32 ............................ TACAGGGGCTGGTAAATCTATCATTATTGCTG 10602 28 100.0 32 ............................ TGTTGAAAATTACATTTCTTGCAAGAATAAGG 10542 28 100.0 32 ............................ AAAGCAGATGTACGAAAGATTCGTTTTATTTG 10482 28 100.0 32 ............................ AAACACTTTCAGATTATGAAGTTTATGAGCAA 10422 28 100.0 32 ............................ ATTTCTTGCTTGCAAAAAAAAATATGTAATTT 10362 28 100.0 32 ............................ AAAATTTTAAAAACATAAATTCATCGAATTTG 10302 28 100.0 32 ............................ CTAATAGCTTCTTGTTTGCATTTTTTTAATGT 10242 28 100.0 32 ............................ TAATTGGTCACGAATGTCGAAGAAAATTATGG 10182 28 100.0 32 ............................ TTCTAAAGCCGGTTGATGATATGGGGTATCAT 10122 28 100.0 33 ............................ CAGAGGTGTTGATAATGTTTGCAAATCACGAGA 10061 28 100.0 32 ............................ TATTACGTTTGGCAACATGCAATCAGTTGTAT 10001 28 100.0 32 ............................ CGCACCATTACTAGATTTATGTCGTTTTCAGT 9941 28 100.0 32 ............................ GCTATTTCAGAGGTGTTAAAAATCGTGCGTAA 9881 28 100.0 32 ............................ TGATACATTGTAGGCACGACCACATATACCAC 9821 28 100.0 32 ............................ CGTGAAAATTTGATATTTTTCAGAACTCTCTA 9761 28 100.0 32 ............................ TGACTACCTTCTATTGGCAAACAAGCAACTAA 9701 28 100.0 32 ............................ TACAGAGTTAGAATTTGGGGGTAAAAAATATA 9641 28 100.0 32 ............................ ATTGGAAGTAGTTTTAAATTTAATGGCTTACA 9581 28 100.0 32 ............................ AAAAATTTTGTTATTTAAAAGTAAAAGATAAA 9521 28 100.0 32 ............................ TGTTAGCAAAAGAGCAATTGTTGTATGAATTA 9461 28 100.0 32 ............................ CGCTATTTTACTAGATTTATGTCGTTTTCAGT 9401 28 100.0 32 ............................ TACATAAGGAATTGCAGCAGCACTGGCATATG 9341 28 100.0 32 ............................ TGTTAGCAAGAGAGCAATTGTTGTATGAATTA 9281 28 100.0 32 ............................ AATTCGCCCTGTATGGTTAAAAAACATTGACT 9221 28 100.0 33 ............................ TGCTACGCGTAAAATTTCAGCTAAATCGATAAA 9160 28 100.0 32 ............................ AAAATTTTAAAAACATAAATTCATCGAATTTG 9100 28 100.0 32 ............................ ATATTATTTAAAGCGTCTAGTATAATGTCTGC 9040 28 100.0 32 ............................ CCATAATTTTCTTCGACATTCGTGACCAATTA 8980 28 100.0 32 ............................ ATTTTCACAATATTCAACATAATTTTTCATTT 8920 28 100.0 32 ............................ TCCAATTAATGAAACATTACTCACATCTATTT 8860 28 100.0 32 ............................ TATGATTGTTTTTATTATGTAGATCAAAAAAC 8800 28 100.0 32 ............................ TTTAAAATCGCATTGACTGTATATTTAACTTT 8740 28 100.0 32 ............................ ATAAACAAAAGATTCAAGAAAATCCAACAAAA 8680 28 100.0 32 ............................ AATGTCACCTTTGATAAAAGATTCGATTACTG 8620 28 100.0 32 ............................ TTATATATATCGTATAAAAAATAAACAAAATA 8560 28 100.0 32 ............................ CGTAACGATTACGTGCCTGATGTTGTCTGATT 8500 28 100.0 32 ............................ TACAAAGGAAAGATAGTGGAAATAAAGTACCT 8440 28 100.0 32 ............................ AATCGCAGCCTGTTTTTTGATCAATCAATAAT 8380 28 100.0 32 ............................ CAAAATATTTTAAAATTCTATTTTAACAAGAG 8320 28 100.0 32 ............................ TATTTCTCGATTCCGGTAGCGTTCAACAATAA 8260 28 100.0 32 ............................ TTATTTTTTGTTTAACTTGTTTATATTTTATT 8200 28 100.0 32 ............................ TACAAAGGTTTTAATTATTGTAAGCGATGTAG 8140 28 100.0 32 ............................ ATGTGTGAAGAATTATTATTGATTGATCAAAA 8080 28 100.0 32 ............................ CGCTGCAATTGTGGGCATACATTATCGCAAAT 8020 28 100.0 32 ............................ TCTTTTTTATTTAATTATGTTTATTATAATGT 7960 28 100.0 32 ............................ GCCTTTGATGAAGAATTAAAGGCGGAAGCTAT 7900 28 100.0 32 ............................ GTCAGGTCGTAAACGTGGAAAAATCGAAATGT 7840 28 100.0 32 ............................ TCGAGCCATAGCTTCTTTACCAATTCCGGTTA 7780 28 100.0 32 ............................ GCCAATTTGACGCAATGAAAGGTCTAAACGGG 7720 28 100.0 32 ............................ AAATTCGCCCTGTATGGTTAAAAAACATTGAC 7660 28 100.0 32 ............................ ACTCATTAATCCCAATGCCGCAAGTTTTGCAA 7600 28 100.0 32 ............................ TTAAAAACTTACTGAAACAATTTCAGGATATT 7540 28 100.0 32 ............................ AAGAGGCGCATTTGCCCACACGGAAATTAATT 7480 28 100.0 32 ............................ AGCCCCTGTAGGCAATGCTAATAAAGGATTGT 7420 28 100.0 32 ............................ TATAATGCTGTGCGAGAAATTGTAGAGACCGG 7360 28 100.0 32 ............................ TCATGTTGTCTGATTTCACTAATCGCCCCTTC 7300 28 100.0 33 ............................ CTGACAGAGTTAGTGAAATTAATGAACCGGTGC 7239 28 100.0 32 ............................ TTAAGTGACAGTCTTGTTGAAGAAGGACTTAT 7179 28 100.0 32 ............................ ATTGATACATACCTATCCTATATTTATCAATA 7119 28 100.0 33 ............................ TGCGTTAATCACGGTGTCGGCTTGAGCTAACAA 7058 28 100.0 32 ............................ TTTGCCGAAACTCAACAAAAATACGGTTTAGA 6998 28 100.0 32 ............................ AATTTACTCAAAAATTTATCAACTGACAAAAA 6938 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGGCAGAAATTTTAA 6878 28 100.0 32 ............................ ACTCATTAACCCCAACGCCGCAAGTTTTGCAA 6818 28 100.0 32 ............................ ATTGATTGTAGGTTTGAAGTTCATAAGGAATG 6758 28 100.0 32 ............................ TAATTATTGGCTTTGTGTGTTCAAAACTAGAG 6698 28 100.0 32 ............................ AGCCCCTGTAGGCAATGCTAATAAAGGATTGT 6638 28 100.0 32 ............................ ATACGCACAAACAGTTGAATTTGAAGATTTAC 6578 28 100.0 32 ............................ TTTACCTGATTTGTTGTATAAATCTAGTAAGA 6518 28 100.0 32 ............................ TGTTTAAAGTATCAGTCAAAACTATCTTTTAA 6458 28 100.0 33 ............................ CACGAGCCATAGCTTCTTTGCCAATGCCTGTTA 6397 28 100.0 32 ............................ AATGCCATCTAAACGTTTAAGTATTTCATCAT 6337 28 100.0 32 ............................ TCATACAACACGCACAGAAGAAGCAAAATATA 6277 28 100.0 33 ............................ CAATCTTATTGTTGAACGCTACCGGAATCGAGA 6216 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGGCAGAAATTTTAA 6156 28 100.0 32 ............................ TAGACGGCCACCGTTTAACGAAAACCATATGA 6096 28 100.0 32 ............................ CTTTCCAGAAGGTGAAAATTCAGCGTAGGTAT 6036 28 100.0 33 ............................ AAAAATTTAAAAACATAAATTCATCGAATTTGC 5975 28 100.0 32 ............................ TAAACCGACAAAACTATGTGCCATTGGTTGTT 5915 28 100.0 32 ............................ TAGACGGCCACCGTTTAACGAAAACCATATGA 5855 28 100.0 33 ............................ TAGAAGGCCGCCATTCAACGAAAATCACATGAA 5794 28 100.0 32 ............................ AAATTCGCCCTGTATGGTTAAAAAACATTGAC 5734 28 100.0 32 ............................ AATTATTCGCAGTGATTTTGTTATTCCCCACA 5674 28 100.0 32 ............................ AAGAAAACAAGCAAGTGTTACTAATCCATCAA 5614 28 100.0 32 ............................ TTGTGAGCTGTTGCAAACTCTAGAATTATATG 5554 28 100.0 32 ............................ ATTTCTGATTCGTGATAACGGTACGGGTATTC 5494 28 100.0 32 ............................ AAAAATGCAATTACGTAAAGTCTTACTTGATT 5434 28 100.0 33 ............................ AATTGGAAGTAGCTTTAAATTTAATGGCTTACG 5373 28 100.0 33 ............................ ATATCAAACCAAATACAGTGCTAGTTACAATAA 5312 28 100.0 32 ............................ AGTTTCTTTAATTATAATTTTCATTTTGTGTT 5252 28 100.0 32 ............................ ATTAATGGCGGGATTTTTTTGTCTGTTGAAAA 5192 28 100.0 32 ............................ TTCGCAAAACCATACTCCGGATCTTCATTATA 5132 28 100.0 33 ............................ CGAAATCAACCCTGGCACCGGCACAAACTCCTG 5071 28 100.0 32 ............................ TTCCACAGTGACGTTTGAAACACGATTAATAA 5011 28 100.0 32 ............................ TAAGATTTGGTATAAAACTGATTTTAAAAATC 4951 28 100.0 32 ............................ AGTCCAAGCCTGTTTTTTGATCAATTAACAAT 4891 28 100.0 32 ............................ ATTGGAAGTAGCTTTAAATTTAATGGCTTACG 4831 28 100.0 32 ............................ TTATGAAGAAGCAATGTGCGCTGTAATTATTT 4771 28 100.0 32 ............................ AATTATATGATTCATCATGGAAATTATGTTCA 4711 28 100.0 32 ............................ ACAATTTTGTTGAGCAACCGTAACGATTTCGT 4651 28 100.0 32 ............................ TGTATATAATCCTTTTTCATCTAATTGCTTTG 4591 28 100.0 32 ............................ GCCACATACATTGCATACACTTGCTCTGGCAT 4531 28 100.0 32 ............................ TAATAGAAACAAGAAAAAAGGTGAAAGAATTA 4471 28 100.0 33 ............................ CTTTTCCGGAAGGTGAAAATTCAGCGTAGGTAT 4410 28 100.0 32 ............................ TTGAAATTTCACTCACTTCTTGCTGTTTGTTT 4350 28 100.0 32 ............................ AGTTTCTTTAATTACAATTTCCATTTTATGTT 4290 28 100.0 32 ............................ TTCTGCGCATTTAGTGACAATTATCAATCATG 4230 28 100.0 32 ............................ CACGATTTTTACCCGAATTTTGTGTCCTTTTA 4170 28 100.0 32 ............................ TTCATCGAATGAGCTATTCATTTTATAGTCAC 4110 28 100.0 33 ............................ TAATAGGTCACGAATGTCGAAGAAAATTATGGT 4049 28 100.0 32 ............................ AATCGCAATTTGTTTTTCGATCAATCAATAAT 3989 28 100.0 32 ............................ TTTAAGTCGTCAATTGATGGCAGAAATTTTAA 3929 28 100.0 33 ............................ GAATAAAAAAATTGTTCTTTAACAAAGAAAGAT 3868 28 100.0 32 ............................ AGCTTTAGAAGGTAAGAAAGTTTATACTGAAA 3808 28 100.0 32 ............................ ATTTAAACACACCTTTTAGATTAAAATAGTGT 3748 28 100.0 32 ............................ TTATTTGCTCTCTTTGATATAAATAATAGCAT 3688 28 100.0 32 ............................ CACGATTCTGACCCGAATTTTGTGTCCTTTTA 3628 28 100.0 32 ............................ TTCTATCTATTGGTGCCTGTCCATGGCAAATT 3568 28 100.0 32 ............................ ACAAGTAGGACAAGGACAAAATATTGCACCAC 3508 28 100.0 32 ............................ AACCAAGACCAAAGACTTTCAGATTATGAAGT 3448 28 100.0 32 ............................ TGATTTATCTTGAAAAACGAGTTTGTCATGAG 3388 28 100.0 32 ............................ GATTCACACCTTGTGCCCATGCCGGTGGTGCA 3328 28 100.0 32 ............................ TTATTGGGAATCAGTAGAAAATATAGGAGAGG 3268 28 100.0 32 ............................ TTTTTTGTTTACGTATCCAACAAAAATTTGGT 3208 28 100.0 32 ............................ ACAATTAAAGGTTTAGGGGTTGTTAAAATAGA 3148 28 100.0 32 ............................ ATACCAATTATTAAATCCAAGAAAACAAGCAA 3088 28 100.0 32 ............................ AATTTGCCATGGACAGGCTCCAATAGATAGAA 3028 28 100.0 32 ............................ ACAAGTAGGACAAGGACAAAATATTGCACCAC 2968 28 100.0 32 ............................ TTAATGTCCTTTCTAAATCGGGAGTTTGCAAA 2908 28 100.0 32 ............................ CATTGCTTTTAGATATTTTTGTCGGTGATAAA 2848 28 100.0 32 ............................ TTTTAATGGAGCAATCAAACTATATGATTTAT 2788 28 100.0 32 ............................ TAATCGCTTTTCAATGTAATGTATGGTTACAC 2728 28 100.0 32 ............................ TTATGAAGAAGCAATGATGGCTTTAATTATTT 2668 28 100.0 32 ............................ TATGCCAATTTTATATTCAGTACTACCAATTA 2608 28 100.0 32 ............................ AAAATGATAACATTCTCAAGTTTTCTGCTCAT 2548 28 100.0 32 ............................ TGTTAGACCTAGCAACACGAAATAATTATTGA 2488 28 100.0 32 ............................ TTAAAGACGAAAACATTCCGGTATGGAATTGT 2428 28 100.0 32 ............................ TGTGGATAACTATTCAACATTTTCGATCTAAA 2368 28 100.0 32 ............................ AACTTTTATTTATTTCGATGTCATTTTTCATC 2308 28 100.0 32 ............................ TAAAATTAAAACTCCAATTTTGTGCCCTTTTA 2248 28 100.0 32 ............................ AAGCTTCCAAAATTTTTGAAGTAGCGGCTGCT 2188 28 100.0 32 ............................ TGTAATATAAACATTTGTAAAAAATCCATTTT 2128 28 100.0 32 ............................ ACTAAAAGCTTAAAATAAATTAAGCTACCACC 2068 28 100.0 32 ............................ AAATGTGCAGATGGTAATGGAACTGTGGCAAA 2008 28 100.0 32 ............................ ACTGTTTCATCGTGTGCTGTCTTTCAGTTGTT 1948 28 100.0 32 ............................ AAGAACATTAAAGAAGTGTCTGCTCCTGCTTT 1888 28 100.0 32 ............................ TACAATTAAAACTCCAATTTTGTGCCCTTTTA 1828 28 100.0 32 ............................ TGAATATTTAATAAAACAATTATTAATCTTAT 1768 28 100.0 32 ............................ TAACAAATCCTTTCGGCGTTTGATGAGTAAGT 1708 28 100.0 32 ............................ ATCGTCTAAAGAACTGTTAATATTGTTATCAC 1648 28 100.0 32 ............................ TGTTAGACCTAACAACACGAAATAATTATTGA 1588 28 100.0 32 ............................ AAGATGATAACATTTTGAACTTTTCTGTTCAT 1528 28 100.0 32 ............................ ATGGAAAGGCGCGATGATTTGGTGCAATCCTC 1468 28 100.0 33 ............................ AATAATCCTCTCGGAAAGCAGTGTGTGCGGTAA 1407 28 100.0 32 ............................ ACGGGCAAAAATATATCACCAGGGGGAGGGGT 1347 28 100.0 32 ............................ ATTCAAAATTCGCTTTGCTTGTGATATATCTT 1287 28 100.0 32 ............................ TTTAATAAAAGATTCAATAACTGATCTAGGTA 1227 28 100.0 32 ............................ TAACATTTCATACAGATTCAAGAAACGTTGTT 1167 28 100.0 32 ............................ TTTAAATTTAAAAAATCTATAATTGCTCAAAT 1107 28 100.0 32 ............................ TTTATATTAAAGCTGATTATCTTCTAAGAATT 1047 28 100.0 32 ............................ TCTGAAATAGCTAATATTTCCACCAATAAAAG 987 28 100.0 32 ............................ AAGATGATAACATTCTGAACTTTTCTGTTCAT 927 28 100.0 33 ............................ ATTCTTCTACCAGTATTTGAACAATACCTTTTA 866 28 100.0 32 ............................ ATTGATCAACAATATTTTTCAATGTTTGATAT 806 28 100.0 32 ............................ ACCAATAAAAATTATCTTGCTTTGTAATATAA 746 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 685 28 100.0 32 ............................ TATCATTAATACAGAGTTGAGCATTAATTCTT 625 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 565 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 505 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 445 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 385 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 325 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 265 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 205 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 199 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTCTTATGAAAAGAGCAAGACGTTTTTTCAGCCCGGAGTTCAAAGCTGAAGCGGTCAAATTAATCAAAGAACGTGGTTATTCGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //