Array 1 29160-29371 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXW01000023.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2838 NODE_23_length_29412_cov_3.7142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29160 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 29221 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 29282 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 29343 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGACGGCCTGGCAGCGCGTGACGTTATTAGCGTGTTCCCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26241-23405 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXW01000024.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2838 NODE_24_length_28696_cov_3.48035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26240 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 26179 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 26118 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 26057 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 25996 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 25935 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 25874 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 25813 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 25752 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 25691 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 25630 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 25569 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 25508 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 25447 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 25386 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 25325 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 25264 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 25203 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 25142 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 25081 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 25020 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 24959 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 24898 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 24837 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 24776 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 24715 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 24654 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 24593 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 24532 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 24471 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 24410 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 24349 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 24288 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 24227 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 24166 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 24105 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 24044 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 23983 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 23922 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 23861 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 23800 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 23739 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 23678 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 23617 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 23556 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 23495 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 23434 29 93.1 0 A...........T................ | A [23407] ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34-793 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXW01000505.1 Salmonella enterica subsp. enterica serovar Virchow strain BCW_2838 NODE_505_length_1280_cov_2.88003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 95 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 156 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 217 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 278 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 339 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 400 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 461 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 522 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 583 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 644 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 705 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 766 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGCGGGACCCCGCGATTTTCTCCCTGACGAAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGAGATCGGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //