Array 1 101349-100685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQP010000010.1 Bacteroides cellulosilyticus strain DFI.1.141 BCNBNLHG_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 101348 47 83.0 30 .....A.....T......C..T....T..........TA.......C CTGTTGGCGTAGATACGAATATGCTCGATT C [101333] 101270 47 95.7 31 ..........AT................................... GCCCGCTCCCCCCGCCTTGCCGCCACGACCG 101192 47 100.0 30 ............................................... GCAAAGGTATCTTGCAGCCATGGCAGGAAA 101115 47 100.0 30 ............................................... GAAGGTGGTAAAATAGATGTCCGTCGTGCC 101038 47 100.0 29 ............................................... CATTTTAATGTTATGAGAAACAACTTATG 100962 47 100.0 30 ............................................... TTTTTTCTTTTTTCCCTGCCATTCCCACAA 100885 47 100.0 30 ............................................... CTCTCAGGACAAATATGCTGAGCCGTTGAA 100808 47 100.0 30 ............................................... CGTACCGGTAGGAACAGCTAACGGCTCGTC 100731 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 9 47 97.6 30 GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Left flank : CCGCCTCAATATCTTCGAATATACTTTCGACGAGCATGATGAGACGGTAGCTTATTCTCTGTCTATTCCTTTCGTCTCTACGTTTGTTTTTGCAGCGGTGATGAAGCACCAGGAGGCTCCGGGTACTACATTCAAGAAGCACATGGCTATTGCCAAGGGTTTGCTGAGTGAAGATGATTACTTACTTCAGGAAATTCTCTTTAATCCGCGCACTCCCTCGCAAGTGGAAAATATTCGTCTGGAGCTGAAGAATTTACTGGAAATTATCAGTACGAAGGATGCGGAAGGGATGAAGCAGTATCTGACGAAGATTAGGGAGAAGATAAAATAGATAGGTGGGATTAAGGGATTGGAGAGAGAAGAGGGTACGGAAAAGGAAGTGGGGCTTCTCTCTTCAATTTGTTAATAAAGAGAGGGGATGATATTTAGGATTGGGGAGCATACTTATTTCTAAAATTATTAAAAATAGTCAAATATAGGCAGGAATGAAATAAAATTCT # Right flank : ACAACCTACATTACAAATTGATTTTCAATTAGTTATAAACCATTTTTGAAATACAAAAACGATGCTGTTTTCAATTAAGAATCCCGCATTTAAGTGGGATTTCTTTTTCTAGAAAAGCTCTAATTGCTGACCGGGAGTATTTATATCCAAAGATTTTTTCCCATAAAACAACTCTATATTTCCAAATTGCTTATCTGTAATACACATAATTCCAACCTGCCCATGCTCCGGCAAGAAAGATTTAACTCTTTTTATATGAACTTCTGCATTCTCACTACTAGCACAATGACGAACATAAATAGAAAACTGAAACATAGTAAAGCCATCTTTCTGCAGATTCTTCTTAAAATCTACATATGCTTTCTTATCCCTCTTTGTTTCAGTAGGCAAATCAAATAATACAAGTACCCACATAATACGATATTCACTAAATCGGTTCATCTCACATTTCCGGATATAATATTCTACGCAATTCACCACTAAAGCATTTATACAAAGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTATCTTTGAACCATAGGAAACAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 29302-29857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQP010000042.1 Bacteroides cellulosilyticus strain DFI.1.141 BCNBNLHG_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 29302 32 100.0 34 ................................ GTCAGATGGCGTATTATCAATATACCAATCGAGG 29368 32 100.0 33 ................................ TTTTGAAAAGTGAAGCAAACAACTTGCAAAGAT 29433 32 100.0 33 ................................ CAAAGTAAGTAAGACGTATAGGCAGGTATCTAT 29498 32 100.0 34 ................................ CCCAGTTTGCAGTCGTTATATTCGCTGTTCCATT 29564 32 100.0 34 ................................ GGAAGAACCTTCCATCTTTAGTCATAACAACATA 29630 32 100.0 34 ................................ CGGTGAAGAGATGGTGCAGGTTCCTTTGCAAACT 29696 32 96.9 34 ............G................... AAAACAGAAAAAGGACTATGCCCGTACACTCTAC 29762 32 96.9 32 ............G................... AAAAAAGAATTGGAAGTAGCCATAGCATCCGG 29826 32 93.8 0 ............G..............A.... | ========== ====== ====== ====== ================================ ================================== ================== 9 32 98.6 34 GTCACTCCTTGTACAGGAGTGTGGATTGAAAC # Left flank : GTGATTTAGATAATTATCCTGTATTTTTAATTTCATAAAAATGTTTATATTAGTGACTTATGATGTAGATACTCAATCAGAAACGGGAGCTAAACGATTGCGTAAAGTGGCTAAAGAATGCTTGAATTATGGACATCGTGTCCAAAATTCAGTCTTTGAATGTGTATTGTCTGAAGCGCAATTTTTGATTTTTAAATCGAAAATCATAAAAATAATAGATTGTGATTTGGATAGTATTCGTTTTTATTTCTTGGGTAAGTATTGGAACAATAGAATTGAGTGTTTAGGGCGTGAAACTGCTATTGATGTAAATTCTGAACTAATAATTTAGTCTATTGCGAATGTGAAGCATTGCATATTTTGTGTATCTTTCGCAAGTGCTAATAATCAGTACCTAAGTCTTTTTTTACTTAAAAATGTGTCCTTTATAAAAATGACTTTTCTATATTCGCAAAAATCTCTTTAAGCATATAAGAATATCAATGCTTTAAAGTGAAAGA # Right flank : CAAGGATATCAGAAAGACCAACTTATATTATTAACATCCTCTTTATACGAGGGTGTGGATTGCAATGATCTTTACATCCAAAACGGTGATATCCGTTCACTTTTCTGTCTCTTTATCCTAATGACGTTGCAAAATTATAGATTTTTTTTTTCACGTTACTGTTTGAACGTCTTTTTTGATGCATACTGTCTCCATTGAGTTCAAAACGCACACTTGTCTACCGGATTGCTTTTAAGCAATTCAAGCCCTTGCAGGGCACTTTCGGCGGTGAGGGTTTGGTCTCTTTTGCTGAAGATACGGTAAATGAGTTCCTGTAAGTCCTTGTTGTCGTCAATGAACAAGATACATGGTTTCTCTTCCTGTGCCGATATGTCTGTTTCTCTGTCTTGAACAGGCAAGGGAGAGGACTCTACTATTTCCTGTTCACTATATACCTCTCTGTCAATTGGTTTTTCTACTGTAAACAGTGATCCTTTACCCAGTTCGCTGCTTACCTTGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCTTGTACAGGAGTGTGGATTGAAAC # Alternate repeat : GTCACTCCTTGTGCAGGAGTGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //