Array 1 183-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDW01000117.1 Streptomyces hydrogenans strain NBRC 13475 sequence117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182 29 96.6 32 A............................ CTGGATAAGGCGCTCAGCATCGGCAGCGCGAT 121 29 100.0 32 ............................. ACCATGTCCGTCACCGTCACCAAGACCGGCGG 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : CTGACGTCATGTCACCGTCAGGCTGGACACGGCTCACCGAAGCGCGCGGAACGCGGCGCCGATTGGCCATCGTGGGCGGTCACGTCATCAGGCGCCCCTTCCTGATCCTCGCCCTGGCGGGCCTGGCGTTCCTCATCACCCGATACGGCAAGGACTTCCCCGTGCTCTACGGAACGGCCCCTCTTGGGGCCGTCCTGATCCTCGGGAGCATGGGCCGCTACCGCCCGGCCAGTCCTGCCGAAGACAGCGACGCTGAACCCTTGCCGCAGGACCCCAAGGCGAACTGACCACCGACTGGCGCCGCGGCTGAGAGGCCGCTGAGAACCGTCCCTCACCGACAGACAGCCGCTGGCAGAGCGGTCTGGTTGCTCACGCGATCGGGGGACTGGGGCCACTCCAAACCGTTCCTCTTCGACACCGCCCTGACCCGTCACCCACACGGCCCAAAAGTGGGGCCAGCCAAAACCGTTCTAGTGGGGCCAAAACACACCGTCGGAAAC # Right flank : CGCGGTCCGGGCCCTGATGCTCCAGTGCGCCA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4869-2311 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDW01000117.1 Streptomyces hydrogenans strain NBRC 13475 sequence117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 4868 29 89.7 33 ...........T.G...A........... CGCCTGCACCAGGATCAGCAGTGCGTCCGTCAG 4806 29 89.7 32 ...........T.G...A........... ACCAACGACACCGGGAGCCCCGAGGGCAACGG 4745 29 89.7 32 ...........T.G...A........... CTGACCCCCTACAAGCACCCCGCCAACCCGAA 4684 29 93.1 33 ...........C.G............... GCCCACGACACCGACGGCAACGCCCGCTTCTAC 4622 29 93.1 32 ...........C.G............... GACGTGCGAGACCGCGAGAACCTCAACCTCAT 4561 29 86.2 32 ...T..T..TT.................. CAGGTCAAGGTCGCGAAGAAGATCCTGGAGGA 4500 29 72.4 119 ........T.....T.....CT..TT.GG GTCTCGGTCGCTTGGGTCGCTGTTTGTCGCCGGCGGGGGAGGGGGTGGGTGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGGGGGCGGTTGCCGTCGGGTAGAACTGCAGGTCAGGCAGC 4352 29 96.6 31 ...........G................. CCCTGACCTGCGCGAACGTACGCGGCCACGC 4292 29 96.6 32 ...........G................. TTCGCCGTCCGCGACAGCGTCGCGATCGCAGC 4231 29 100.0 32 ............................. GGCCGAGAGTCCTCGTCTTCGGTGACCAGCCA 4170 29 100.0 32 ............................. AACGGGGTGGACCCCGCCCCCAGCGGTCGCGG 4109 29 96.6 32 ............................T CCGTGGGCCGGACGCTCTCCGCGGGCACGGCG 4048 29 100.0 32 ............................. CTCCCGAACCCGCGAGCCCCCGCACCCCTTGG 3987 29 96.6 32 .....T....................... ACCCCGAGCGGAACCATCTCCCGCTCGCCATC 3926 29 100.0 32 ............................. GGGACACCGCGCGCACACGGCCTTCGCCGAAT 3865 29 100.0 32 ............................. GCCACCCCGCCCGCCCTCGGCGCCGTGCAGTA 3804 29 100.0 32 ............................. ATGTCCCCCGCCGCGCGGAAGATGCTCGCAGA 3743 29 100.0 32 ............................. CCCGGCAACGACGGCAGCAACGGCGACGACAA 3682 29 100.0 32 ............................. AACGTGCAGCGATTCAGGTTCGACCTGACTCC 3621 29 100.0 32 ............................. CCCGAAGACCACGACGGCCAGGTCCCGCGCGC 3560 29 96.6 32 ...........G................. ACGGTCCTCGACGGCATCCGCACGGTGTCGTC 3499 29 100.0 32 ............................. GCCACCCCGCCCGCCCTCGGCGCCGTGCAGTA 3438 29 100.0 32 ............................. ATGTCCCCCGCCGCGCGGAAGATGCTCGCAGA 3377 29 100.0 32 ............................. CCCGGCAACGACGGCAGCAACGGCGACGACAA 3316 29 100.0 32 ............................. AACGTGCAGCGATTCAGGTTCGACCTGACTCC 3255 29 100.0 32 ............................. CCCGAAGACCACGACGGCCAGGTCCCGCGCGC 3194 29 96.6 32 ...........G................. ACGGTCCTCGACGGCATCCGCACGGTGTCGTC 3133 29 100.0 32 ............................. GCCACCCCGCCCGCCCTCGGCGCCGTGCAGTA 3072 29 100.0 32 ............................. ATGTCCCCCGCCGCGCGGAAGATGCTCGCAGA 3011 29 100.0 32 ............................. CCCGGCAACGACGGCAGCAACGGCGACGACAA 2950 29 100.0 32 ............................. AACGTGCAGCGATTCAGGTTCGACCTGACTCC 2889 29 100.0 32 ............................. CCCGAAGACCACGACGGCCAGGTCCCGCGCGC 2828 29 96.6 32 ...........G................. ACGGTCCTCGACGGCATCCGCACGGTGTCGTC 2767 29 100.0 33 ............................. TCTTCAGCTCGTTCATGCGGGCCGGCTTCACCG 2705 29 100.0 32 ............................. GCGTCCCGGCACGGGTCGGGGTTCGTGACGTC 2644 29 100.0 32 ............................. ATGTCGCCGAGGTTGAAGCGGGCAATCGTGGC 2583 29 100.0 32 ............................. TTCACGCCCATGGGGTGGGTGCCGTGCTCGCG 2522 29 100.0 32 ............................. AGGGCGAACGGGGCGAACAGCAAGCCAAGGAG 2461 29 100.0 32 ............................. ACCACCCGGAGGAGAGCCCCGTGGACGCCGAC 2400 29 100.0 32 ............................. TCGACGCCATTGCCGCGCTCGGAGCCGCCGCC 2339 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 41 29 97.3 34 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : GCTCCCCGCGCCTGCGGGGATGGACCCGCCACCGCGCTCACGGTCACCACCGCGCTCCACTGCTCCCCGCGCCCGCGGGGATGGACCCCATCACGGGCTCGTCGCCCCGGCCGGCGCCACCTGCTCCCCGCCCGCGGGGGATGGCTCCCGCAGCGGGCTGAATTGCGGGTGGGTCAGGCACTGCTTCCCGTGCCTGCGGGACTCATCTTCGGGTGTGGGTGCTGGAGCCGGGTTTGGTGGTGGGGTTGTGTCGGTTCTTCGGTCGCTTGGGTTGCTGCTGTCGGTGGGTGTGGTGAGCGGGGGAGTGGTCATGGTGGTCGTTCGCTACCGAGGTCGCCATGCTCGGGGGTGCTCACCACCGAACTCACCATGCCGGGGGTTGCTCACCACGGGGCTCACCACAGTGCTCACCATGGGCGGCCCCTGGGGGTGTTTTGTCTGTTTCGGTGAAGGTTGCTCGGGAGCGTGCTGGCGTGGGGTAGAACTGCAGGTCAGGAAGA # Right flank : TCGACCAGATCATCGGAGCCTCCTCCGACCACCTGCTCCCTGTCTAGTGTGATGCGCCAGAAATCCTGAGGGTTGGTAAGTACCCTGTTGTCATGTCGCATTCGGGGCCTTCTGCTGTGGCGATCACGTTGTCTGAGGCTGAGCGTGCCGAGTTGGTGCGCCGGACGAAGATGCCGCACCGGCGCTCGGCCGAGAAGGCCCGCATCATCCTGGCGTGTGCCGAGGGCATGTCGAATGTGGGTGTCGCACGGCTCGTCGGGGTCCAGGCCAAGACGGTCGGCAAGTGGCGTCGGGCATTCGCTGCAGAGCGGATGCCCGGGCTTGAGGATGCCGGTTGGATCGGCCGGCCGAAGGCCGGCCTGATCCTCGACGATGCTGAGCGCAGGCAGCTGCAGCAGTGGGCACGGCAGGCCAAAACCGCCCAGTTCCTCGCGTTGCGGGCCAAGATCGTGCTGCGCTGCGCGGAGGGCGGGACGAACCAGCAGGCCGCGGCCGACCTC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8665-7982 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDW01000117.1 Streptomyces hydrogenans strain NBRC 13475 sequence117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8664 29 100.0 32 ............................. ACCACGGTTGATCAGGCCGGCTGGCTCGACCC 8603 29 100.0 32 ............................. CAGGCCCGGACCATCTCGTTCTCCATGTCGAG 8542 29 89.7 32 T..........A.C............... GCAAGGCTCAGCGCAAGCTGCGCGCGCGGTTC 8481 29 100.0 32 ............................. GACGTCGCCGACGGCGTGCAGTCGGGCGAGTC 8420 29 96.6 32 .........................A... TCGCCCAGTTCCTTGTTGAGCCGGCCCCCGAC 8359 28 82.8 32 ...T.......T.G......-.G...... AGCACTCCGGCGCGAGGCCGCCGACGATCCGA 8299 27 82.8 32 ...T.........--.T........A... ACCGACCTGATGCCCGAAGAGCGGCAGGACGT 8240 29 79.3 20 .............C...A..TCC.T.... CTCTGCCGGGAGCTCGCAGC Deletion [8192] 8191 29 75.9 32 G....GT...TA.G...........A... ACTCCGCTGGGCCGCGCCGCAGACCTCACCAT 8130 29 82.8 32 .C.........C.G.........T.T... GTCGAGCGGGCTGCGGGCGTGAGACGAGGACG 8069 27 89.7 32 .............--..........T... GCCTCGATTTCCAGCGGCGCGCGCTGGAGATC 8010 29 89.7 0 .............C........C..T... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 89.1 31 CTGCTCCCCGCGCACGCGGGGATGGCCCC # Left flank : GTTCTGGACTGCTCCCGCCCGCGTGGGGAGGGGCCCTGCTTGCCGCGCCCGCCGAAGTGCGCGCCGAGCTGCTCCCCGCGCGCGCGGGGATGGCCCGGACGTGCCCTTTGCCCTCGGGCTCATGGCTTCCTGCTCCCCGCCTGCGTGGGGATGGCCCCGTGGCGCTCGCGTTCTTCGGCGGCAAGGACTCCTGTTCCCCGCGTCTGCGGGGCTCACCTTCCGGTGTGGGTGCTGAAGCCGCCTTTTGATGGTGGTGCTGTGTCGGTTCTTCGGTCGCTGCTGTCGGTGGGTGTGGTGAGCGGGGGAGCGGTCATGGTGGTCGTTCGCCACCGAGGTCGCCATGCTCGGGGGTGCTCACCACCATGCTCGCCACCGGACTCACCATGTCCGGGGTTGCTCACCACGGGGCTCACCATGGGTGGCCCCTGGGGGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGCGTGCTGGCTTCGGGTAGAACTGCAGGTCAGGAAGA # Right flank : AAGTGGTTCGGCTACAACGTGGGTGACCCGAACCTGTGTGGAACTCCACGTAATTCCCCATCAGCAGCATCAGGTTCCCCAGCCAAACGTTCGAACACGGCAATGGGTGTCGTCTGTGCTCCCGTCCGGACAATCCTGAGACGGCTTGCAGCAACCTCCGTATCTTGGCGCCATGACGGACGAGGAAGAACCGAAGCTCTACGTGAACCGCTGGGGCGACACGTCAGATCCAACCCTGGAGCGGCGGGGGCCCCGCCAGGACGCGTGCTCGTGCTTCGACCAGTCCAGGTCACGCCCGCGAGCCCGCGTCGGGTTCCACACCGAACGGCAGGACGCCTCTGCCCCGGGTTGGCAGCACCTGCTGGAGCTGGTCGATGAGGCCGCTGCCGACGGCCGTGAAGAGTTCCGTCCCCTCACCGAGCTGAGCCCGGAAGAGCGGCGGCAGGTCGTCACCCTGCCGCCGAGCATCGCCAGGCTGACGGCGGTCAAACACCTGGTGC # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 11969-8947 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDW01000117.1 Streptomyces hydrogenans strain NBRC 13475 sequence117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 11968 29 72.4 90 A............T.......C.T.CGGG GGCCAGGGGTAGGGCTGGGGGGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGGGGGTCGGCGTCGGGTAGAACTGCAGGTCAGGAAGT 11849 29 89.7 32 ...........C.G...........C... TTCCACACCTCGGCTGGGAGGTAGAGGGTGGC 11788 29 69.0 32 .....T.TT..TTGT..A.......T... CGCTCGGCGAGGCCGGACACCGTCCGGCTCGT 11727 29 93.1 33 .......T...C................. GTCCCGCCCCTCTGGGAGCGGTAGCCCCCCCGG 11665 27 82.8 32 ..AT.......--G............... GACGCTCGCAACCCCGAGGCCGCCCCCGGCCA 11606 29 86.2 28 ...........CTG...........C... CGGCCGGCCCGGGATCTTCCCGGGGTGG 11549 29 72.4 31 TG....T.T..C.G.......G...C... CCGCGATGGACGACCCGCGGAGCTGGTTCGA 11489 29 89.7 32 ......T..................CT.. ACCTTCGGGTTCAGGAACAGCTCGCGCGGGAC 11428 29 89.7 92 ...T..................C..C... TCCAGACGGCCGGTCTTGTCGTCGGCGCGGGTCCGCTCCCCGCCCGAGCAGGAAGGGCCCCTGCGTACCGCGAACTGGCACCGGTCCATGCT 11307 29 89.7 32 ............T.T.............T GCGGCGGCCGGCAACCAAATCCTCGCCCAGGT 11246 29 89.7 32 .......T..............A..T... GCTCTGCGGCAGGGCAGCGGGGTCCGCCTCGA 11185 29 82.8 32 ...T......T.....A.....C..T... GAGCCGAACGAGGTCTACGGTGGCGACGCGGT 11124 29 93.1 32 ...........T.G............... GCGCCGCTGACACTGGGCATGCTGGAGTCCGG 11063 29 89.7 31 ...........T.G...........C... ACCGAGGGAACGCCAGGAACGCTCCCGTTCT 11003 29 100.0 32 ............................. TCGAATGTCTCCGGGACCTCGCCCCACGCGTC 10942 28 93.1 32 .....-.......T............... GAGGCCGACGTCCGTGCGCTCCTGGCGTCGGC 10882 29 89.7 32 .........A......G........T... GCGGTGCCGCCCGCGATCATGTCGTTCCACTG 10821 29 89.7 32 ...........TTG............... CCAAACGCTTCGGCGTGCGACCGGTTCGACGT 10760 28 89.7 32 .............T-..........G... CTGGACCATCTAGCCATCGGGCACTGGGGTAT G [10749] 10699 29 96.6 30 ......T...................... CGCCGGTCGGCAGGGAGCACGAGACCCTGG T [10684] 10639 29 75.9 32 TCTA......T...T........A..... GCCCGCCTCGCCGCCTGGCGCACGCTGACGGA 10578 28 79.3 52 ...T.............A..CC...-..G TGGCGGGGGAGTGGGCCACCGCCCACGGCCGGCCCCGCGCCTGGCCTCCGCC 10498 28 86.2 30 T..........-.T...........T... CACCACGCCCGGCATCGAGCAGTCGGCCGC G [10485] 10437 29 82.8 32 .......T...CTG...........T... ATCAGGACGAAGCAGACCACTCGGTGGCTGTC 10376 29 100.0 32 ............................. CCCGAGCAGCAGGAGCAGATCGTGGCCATGCT 10315 29 96.6 32 ............T................ GAGGCGTCGCCCGGCTGGTCCACACCGAAGCA 10254 29 89.7 30 ...........C.G...........T... GTGGCCGGGCGGGAGCCGGTCGAGCCAGTC 10193 29 82.8 32 .......T...T.G......A....T... ATGGGCGCCCCCTCGGGTGTGCTGGGTTGGTG 10132 29 82.8 32 T..........T.G......C....T... GACGGGACGAAGTGCAGGCCCTCGAACGGGGT 10071 28 89.7 32 ...........-.T...........T... CCGACCACCGCGATCGCGACGTTGCTAACGAT G [10058] 10010 28 89.7 30 ...........-.T...........C... GCTTATCCGCGAGGGCCTGGCGACCCGTCT G [9997] 9949 29 79.3 32 .......T.C.C.GT..........C... CACGCGGCCACGCTCGCCCTGAATAAGGGCCA 9888 29 82.8 32 T..T.......T.G.......G....... GGACGTTCTCGGCGACGAGCCGGCGTGAGGGC 9826 28 86.2 32 .........A.-.T..T............ GACAAGAAGACCGCCCTCTGGCAGATGGGCGA 9766 29 89.7 32 ..........T...........C..C... GAGGTCCCCGCTTCGGTCCAGGATGCCTTCAA 9705 29 86.2 32 .........A..T............C.T. GGCCACACCATGACGCGGCAGAACGCCGTGAA 9644 29 93.1 31 G..T......................... GCTACCACCAGGCCAAGTCGCGCACCGTCTG 9583 29 89.7 32 ........T..C.A............... GAGCTGCCCTACGACCTGGGTGGCTTCCGTGA 9522 29 79.3 32 .....T.....T.G........C..TT.. GACCGCACGCTCATCACCGGGCCCATCCCCGT 9461 29 89.7 32 .....T.....C.G............... ATCACGCTCTCGCGGCAGGTGATGCACGAGGG 9400 29 89.7 32 ...........C.GA.............. GGGAGGTCGAGGAGGAGGGCGACGGGGGCGAG 9339 29 89.7 31 ...........C.G...........G... GACCACGGACCTGGGCGACTTGGTCGCCGCC 9278 29 86.2 32 ........T..C.GT.............. AACGGCATCCGCAAGGTCTGGAACCTGGTCAC 9217 29 89.7 59 ..........TA.G............... CCCCTTTACCCAGAGCTGATCAAGGTTCTGGACTGCTCCCGCCCGCGTGGGGAGGGGCC 9129 29 69.0 4 .....TG..........C.AAG..CG.G. CGAG Deletion [9097] 9096 28 93.1 33 .............G...........-... GGACGTGCCCTTTGCCCTCGGGCTCATGGCTTC 9035 28 86.2 32 ...........-.T..T........C... GTGGCGCTCGCGTTCTTCGGCGGCAAGGACTC G [9022] 8974 28 75.9 0 ...T........T.T......C.C-...T | ========== ====== ====== ====== ============================= ============================================================================================ ================== 48 29 86.7 35 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : CTCCCACCGCTCATCTGCTCCCCTCGCCCGCAGAGCTTGTGGGCTTGTGGGAGCCAGGGTTGGGGCTGGGGGTTTTGTCTGATTCGGTGAGAGTTACTTGGGAGCGGGTCGGCGTCGGGTAGAACTGCAGGTCAGGAAGTCTGCTCCCCGATCGCGCGGGGATGGCCCCAACATTGGCCACCTGCCGACCAAGATCCCGACCTGCTCCCCGCGCACGCGGGGATTGGCCCCAGGCCCGGGGCGGTGGCGGTGCTGGTGGCGGTCTGCTCCCCGCCTGCGCGGGGATGTCCCCGTCCGCGCGCTGCGGGGCAACCCCGGTGGCCGCTGCTCCCCGCCTACGCGGGGATGGTCCCGCGGTCCAGACCGCGTACGACAAGAAGTTCGGCTGCTCCTGCTCGCGCGGGGATGGTTCCGACACGCGCGTTCCGCCGTCGTTGAACGGGATCTGCTCCCCGCCCGCGAGGGCCCCGTTCGACGGCTGCCTTGGCGATGTCCTCGGG # Right flank : TCCGGTGTGGGTGCTGAAGCCGCCTTTTGATGGTGGTGCTGTGTCGGTTCTTCGGTCGCTGCTGTCGGTGGGTGTGGTGAGCGGGGGAGCGGTCATGGTGGTCGTTCGCCACCGAGGTCGCCATGCTCGGGGGTGCTCACCACCATGCTCGCCACCGGACTCACCATGTCCGGGGTTGCTCACCACGGGGCTCACCATGGGTGGCCCCTGGGGGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGCGTGCTGGCTTCGGGTAGAACTGCAGGTCAGGAAGACTGCTCCCCGCGCACGCGGGGATGGCCCCACCACGGTTGATCAGGCCGGCTGGCTCGACCCCTGCTCCCCGCGCACGCGGGGATGGCCCCCAGGCCCGGACCATCTCGTTCTCCATGTCGAGTTGCTCCCCGCACCCGCGGGGATGGCCCCGCAAGGCTCAGCGCAAGCTGCGCGCGCGGTTCCTGCTCCCCGCGCACGCGGGGATGGCCCCGACGTC # Questionable array : NO Score: 4.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-0.11, 8:1, 9:0.09, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [47-42] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 26620-23069 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDW01000117.1 Streptomyces hydrogenans strain NBRC 13475 sequence117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 26619 29 75.9 32 ...T......TT.GT....T.....T... ATGCGCGCCCGCTACGCGGGTGGCGGGATGAA 26558 29 96.6 32 ...........C................. AGGAACGCCCCGAAGGCGGGGTGGACGCCGAT T [26543] 26496 29 86.2 32 ..........TG..T..........C... CAGAAGGGACGCCCGAGCTCGTCGATCCTGTC 26435 29 72.4 32 ..T...G.T..GT.T.T........C... CTGCAGTACGTCACGGACGACCTGCCCGGCTG 26374 29 86.2 32 ...T......TG..T.............. GGCATGGGCTACAAGGGAATCGTTCAGTTCGG 26313 29 82.8 68 ......TT...G............AT... TCCAGGTCGTGCAGAACGACGTCGTCCCACCCCTGCTCCCCGCCGGCGAGCAACTTGCTGCCGACTTC 26216 29 100.0 32 ............................. GGAGTCTTGGCGCGCGGCGAGTCGACGGAGAC 26155 29 100.0 32 ............................. AGGGCGGTGACGGTGGCACGCACGGAGACGAT 26094 29 96.6 32 ...G......................... GGCACCGGGGCGTCACAGTTGACCAAGCCCGT 26033 29 96.6 31 ..........T.................. CCCTGGCCGATGCAGTGCTCCGCAGCAAGCG 25973 29 100.0 32 ............................. GTCAGTTCCTCCTGACCCTCGACGGCAGCGAA 25912 29 100.0 32 ............................. CTGGCCGCCGCCGAGGCGGAGGCCGCAGTCAA 25851 29 100.0 32 ............................. AAGAACTCGCGCCGCTAGTTCTCCCTCTCGCC 25790 29 100.0 32 ............................. ATGCTCCCCGGGTGCCTGTCGACGTGCTGCAT 25729 29 100.0 32 ............................. CCATGCTCGGAGCTTCTGGCACCGCCGGTTCG 25668 29 100.0 32 ............................. GTCCGCGACGGCGAACTGATCACTACGAAGGC 25607 29 96.6 30 .........................C... GCGCGCCCTCGAATGGGCGTCGAAGGGACG 25548 28 89.7 32 ..............T.T.......-.... AGGAACGCCCCGAAGGCGGGGTGGACGCCGAT 25488 29 82.8 32 ...T......TG..T..........T... CAGAAAGGACGCCCGAGTTCGTGGATCCCGTC 25427 29 72.4 32 T.T.....T..GT.T.T........C... CTGCAGTACGTCATGGACGCTCTGCCCGGCAG 25366 29 86.2 32 ...T.......G.AT.............. GCTGCCGGATCGAAACCGGCCCGGGGCACTCC 25305 28 86.2 32 .........A.G....G.......-.... CGGCTCACCTGGTGCCTGTACCGGGTTTCCGC 25245 29 89.7 32 ...........C.A...........C... ACCGTGTCGCAGACCCACGCATGGGCTCACAC 25184 29 86.2 32 ...T..T....T.G............... GACGCGACGGCCCCCATCCAGCTGGAGGTCGT 25123 29 93.1 33 ..........TG................. TCCGTTCCTAGGTGGGGGGGGGTGTGGCCGATG 25061 29 86.2 32 ...T......TG...............T. GGGCGCGGCCCCGGATCAGGTGCTCGAACACC 25000 29 82.8 32 ..........TCTG...........C... GTGGCGCAGATGCGCAGTCTCATGGAGCGCTA G [24979] 24938 28 79.3 32 ..-..T.A...T....T........C... AAGGTCGGCTGGCGGGTCTACAACGCCTGGCC G [24918] 24877 29 86.2 32 ...........G.T...A.......C... GGGGACGCCGCCCCGCACACCGTCCCCGTCGC 24816 27 86.2 33 ...........C.G......-...-.... CCGCGACCCCCACGCGTGGGCACTGCTCGGCAA 24756 27 89.7 32 ...........-.G..........-.... CAGGCTTCGGCATGGGTGCTGGTGGCCACCAG 24697 29 79.3 32 .....TT....T.G........C..C... GTGCCGATTGTGTCCCTTGAGCCGACGTCCGG 24636 29 82.8 32 .....TA....C.G.....C......... GCGACGCCAGCGAGAGCGCGCGCCACCCCGTA 24575 29 96.6 33 ...........G................. GCTCACGCGCTCGTGGCCTTCATCCGGGGCACG 24513 29 89.7 32 .....T..T................C... TGCCACCCAGACAACGCGCACGACTACAACCA 24452 29 89.7 32 ...........GG............C... CCGCAACTCTGGTACCTCGGCAGTGCCGGGAT 24391 29 86.2 32 ...........T.G.......C....T.. GCCTTCTTGCGGCGGGCCTGGACGGCGGAATC 24330 29 72.4 32 ...T.T....TG..T.......C.AT... AAGCGCAAGGGTGCCGACTGGGAGATCGGCTT T [24310] 24268 29 96.6 32 ...........C................. CAGGACAGGGGGCCCTCGTCCGTCGCCGCCTC 24207 28 82.8 31 .....T....TG....T...-........ TGCGCCGCCGGTAGTCCCTCGCCCTCGGCGT T [24181] 24147 29 93.1 32 ..........T..A............... TGGCCCCATGACCTGGGCACCGCCATCCAGGA 24086 29 89.7 32 ...........C.G..............T CGAACACACGGATCGAATTGCCCCGTGGTCAG 24025 29 89.7 32 ...........C.G...........C... CGCGACCCCCACGCGTGGGCACGGCTCGCCGA 23964 29 89.7 31 ...........T.G...........C... ACGACGGAGACATCCATCGAGCTGGTCACGG 23904 29 86.2 32 ...........T.G...........CT.. GGTGTGCAGAGGATCGGGATGGTCATCGCGGT AC [23885] 23841 29 79.3 32 ...........CTG..T.......CT... ATCCAGATCGCGTGCGATCTGGAGAAGGTGAG 23780 29 82.8 32 A.......T..G.....A..........T GAGTACCAGAAGCCCGCCGCGAGCATCCGTGC 23719 29 72.4 32 ...T..T....T.GT.TA..........G ATCTGCGCGGCCGTGATGGTCTTCAAGGTCAA 23658 29 75.9 32 ..AT.T..G..G..T..........C... TGCGAGAGGGTGCTCTGATTCCTGCTCTGCTC 23597 29 89.7 32 ...........T.G...........C... TTCGTCGAGATCCCCACTGCCGGTGGCTGTTG 23536 29 79.3 32 .....T..T..CTGG.............. TGGCGGTCAAAGACGAGCCCGCCGCGCTCGAC 23475 29 93.1 32 ...........G.........G....... AAGTTCGCGGCTTGGAAGGATGGCGGCGAGAT 23414 29 86.2 31 ...T.......G..T..........C... CGAGGGGCACCGCATGAGCGGGCCCGAGCAC 23354 27 86.2 28 ...........--....A......A.... GGCAGCGGCAGGGGGGAGGCGACTTCGG 23299 29 86.2 32 ...........G....T....G.A..... GCCCGCCTCGCCGCCTGGCGCACGCTGACGGA 23238 28 75.9 52 ...T.......G.....A..CG...-..G TGGCGGGGGAGCGGACCACCGCCTACGGCCGGCCCCGCGCCCGGCCTCCGTC 23158 29 89.7 32 T..........G.............C... ACGTCGATCAGGTAGTCCTCCGCGCCGCCCTG 23097 29 89.7 0 ...........T.G...........C... | ========== ====== ====== ====== ============================= ==================================================================== ================== 58 29 87.9 33 CTGCTCCCCGCACCCGCGGGGATGGACCC # Left flank : CGCCCGTGGAGGTCTACCTCCGGTTGCGGGTGACCTCGGGGTTGAGCGCGAAGACTGTGGAGGCCGCCGAGGCGGGCCTGCCGAACACCTGGCACGGCGTAACGGTGCTGTGTGGGGATGAGCCGGTCGGGATGGGTCGTGTGATCGGAGACGGTGGTTGCTTCTTCCAGATCGTTGACATCTGTGTCGCGCCTCAGCACCAGGGGCGCGGCCTGGGGAAGAAGATCATGGCGGAGTTGATGTGTGAGCTGGAGCGGAGGGCGCCGGACGGTGCGTATGTCTCGCTGATCGCTGACGGCGATGCCCGGTTCCTGTATGAAAAGTTCGGATTCCGGCAGACAGCACCGGCGTCGGTCGGTATGTACCTCACTGTGTGACGGAGCCGGGCTGTGGTCGCGACGGGCCCGGGTCCAGGAGGCGTCAGCCGATGGTCGGCTTCTTCGTCCAGTCGGTCGGTGGGCCTTTGCGGGTGAGGCGGCGGGTCGTGAGGGTATCGTCGC # Right flank : TTCAAGGCCGTCTTCGGCGCCGGCGCGATCTCCTGAAGCAATAACGCGGCATCGCCACTCGCGACACCTAGACCGTCGAGTCCTATGGAGCAGCCGTCACTCTTGTGTCATTCCTGATGGGGCCTGGCATTTGACGACAGAACCCAGGGCGGCTCGGAATCTTCGGAACGTGACGCCCGGCGTGGCCCGGGCTGCTAGCGTCCTGTTCCGTTCGGGCCGTAACCGTTAAGAGCAAGGGGGGCGGTGGCGCGTGAGTGGTGTCGTGGGCTTATCCGGTGGGGGTGTTCGGCCTCGGTGGGATCCTCGGGAGTCCCCGTGCATCAGGGTGTCGATGCTCGATGACCGGCTCGTCGAGCTGAACCTGGTGGAGCTGCTCCACGATGCCGACGGCGTGCGGGCCGTGGAAGGCGGCACGCCGGGCGAACAGGTCGCGGTCGTCGAGTTCCTGCTGGCGATCTGCTACGCCTCCGGCACCTATCCGGAGTCGGCGGCGGAGTGGC # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [84-53] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 28079-27284 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDW01000117.1 Streptomyces hydrogenans strain NBRC 13475 sequence117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 28078 29 100.0 32 ............................. AAGGCCGCCGCCGCCCGCGAGATCGGGATCAC 28017 29 100.0 32 ............................. CACATGCTCAAGCAGTGGTCCCGCGAGTTCCG 27956 29 100.0 32 ............................. GGCGAGTTCACCCCTCGCCCCTGACCCGCGAG 27895 29 100.0 32 ............................. GCCACCGACGCGTAGGCGGCACCCGCAGGCGC 27834 29 100.0 32 ............................. GGCAGTAAGTCCGGCATCGTCATGAAGGAGGG 27773 29 100.0 32 ............................. GCGATCAACCCCAAGGACTGGCTCGACCCGGC 27712 29 89.7 32 ........T.....T........A..... AACGGCATCCGCAAGGTCTGGAACTTGGTCAC 27651 29 86.2 32 ..........TA....T.....G...... AACAGCGACGAAGTGCCGGCCTACCGGCACAC 27590 29 89.7 32 ...........T.............G..G TGCACCCGACCGCCGCCCCGGCCCTCGGTGAA 27529 29 96.6 65 .............C............... ACCATGCGGACCACCGCCCGCATACAGGCCGTCTGCTCCCCGCACCCGCAGGGACAGCGGGACTC 27435 29 86.2 32 .......T...T.C..T............ GGCCTCGCCACCGTGCCCGCCGGCGACCTGTG 27374 28 86.2 33 ..........TG.C...........-... TGGCGGATCCGGCGTGTACGCCGCCGGGAACGG 27313 29 72.4 0 T....G.T...T..T...T......TT.. | T [27304] ========== ====== ====== ====== ============================= ================================================================= ================== 13 29 92.8 35 CTGCTCCCCGCCCGCGCGGGGATGGACCC # Left flank : CGGGTTCCTCCTCGGCGCGGGGATGGACCCGGGACCTCCCTGGACCAGCTCCGTCAGGAGGTCTGCTCCCTGCTCGCGCGGGGATGGTCCCGGCCTAGCGGAAGAGCGGGACCGACTGGCCAGCTGCTCCCCGCGCCCGCGGGGATGGTCCCGGCCGTGAGCTCACCTCGCTCCACCGCACCAACTGCTCCCCGCGCCCGCGGGGATCGGGCCCTTCTTCTCACAGCCGCATCGCGGCCGCGGCGACTTGCTTTCTGCGCCGTGGAGATGGCCCGTTGCGGTCGGTGAGTGTGGGAGAGGTCGTTGTGGTTGCTCGCCACCGAGCTGATCCTGCTCCTGTGCTCACCACTGAGGTCACCATGCCCGGGGTTACTCACCAAGGGGCTCACCACCGAACTCACCACGGGTGGTTCTCTGGACCCCCGGGGAGTGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGAAGCGGGCCGGTGTCGGGTAGAACTGCAGGTCAGGAAGA # Right flank : GACGGGGCGGAGGCTGGGTGGCAGGGGTGTGTGAGTGTTTGGGATCCGGCTGGCTGTTGGGGTGGCGCGGGGTGTGGTCGGTTTCTTTGTCCTGGGCTCTCCCTTCCGTACTATGTACTGGGTGAACACTGATTTTGACTCTTACTCGCTCCGTGCTGGTCCGCCGCCCGTGGAGGTCTACCTCCGGTTGCGGGTGACCTCGGGGTTGAGCGCGAAGACTGTGGAGGCCGCCGAGGCGGGCCTGCCGAACACCTGGCACGGCGTAACGGTGCTGTGTGGGGATGAGCCGGTCGGGATGGGTCGTGTGATCGGAGACGGTGGTTGCTTCTTCCAGATCGTTGACATCTGTGTCGCGCCTCAGCACCAGGGGCGCGGCCTGGGGAAGAAGATCATGGCGGAGTTGATGTGTGAGCTGGAGCGGAGGGCGCCGGACGGTGCGTATGTCTCGCTGATCGCTGACGGCGATGCCCGGTTCCTGTATGAAAAGTTCGGATTCCGGC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //