Array 1 210534-208855 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZVY01000002.1 Salmonella enterica strain DR-022 NODE_2_length_666168_cov_15.0741_ID_1677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210533 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 210472 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 210411 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 210350 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 210289 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 210228 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 210167 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 210106 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 210045 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 209984 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 209923 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 209862 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 209801 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 209740 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 209679 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 209618 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 209557 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 209495 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 209433 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 209372 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 209311 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 209250 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 209189 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 209128 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 209067 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 209006 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 208945 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 208884 29 100.0 0 ............................. | A [208857] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229012-227215 **** Predicted by CRISPRDetect 2.4 *** >NZ_SZVY01000002.1 Salmonella enterica strain DR-022 NODE_2_length_666168_cov_15.0741_ID_1677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229011 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 228950 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 228889 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 228828 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 228767 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 228706 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 228645 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 228584 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 228523 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 228462 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 228401 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 228340 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 228279 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 228218 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 228157 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 228096 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 228035 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 227974 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 227913 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 227852 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227791 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227730 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 227669 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227608 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227547 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227486 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227425 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 227364 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 227303 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 227242 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //