Array 1 51329-54946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNUD010000011.1 Lactobacillus delbrueckii subsp. sunkii strain CIRM BIA 266 CIRM_BIA266-i1-1_scf11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 51329 33 100.0 35 ................................. AGCTATGCGAACGTCAAGCTGCAGGCTGGAGCAGT 51397 33 100.0 36 ................................. TACTGCTTTTAAGATCGCAGTCACTGTAACCAAGAC 51466 33 100.0 37 ................................. CATGATTTTGATCTTTTTGATCGTGGGAACTAATCCG 51536 33 100.0 37 ................................. GCTGAAGCATACGCCAGAAACGCCATAGAAGGTCGCA 51606 33 100.0 37 ................................. TTAGGCGAGAGTCTAAGCAGTGGAAACACGGTTATGG 51676 33 100.0 35 ................................. TCAACTTGTGACAGCCGACAACAGTAAAGAACTCA 51744 33 100.0 33 ................................. CTCAAAGAACTAGTTAACGAGCTACCGGATCCA 51810 33 100.0 39 ................................. AAACAGCTTGCCGACCTCACTTACCAAGGTGGCATCGAC 51882 33 100.0 36 ................................. CGGCTGAGTCGTAACTGGTCTTAGGGCCAGCTTGCA 51951 33 100.0 33 ................................. TTTAATGGTGTGTTCATATTTCGTCTGATAAAT 52017 33 100.0 34 ................................. TACTCACATCGATTACACCGACGAAGAACTGGAT 52084 33 100.0 32 ................................. ACTACTCAAAGCAGCAACTTGCAGGCATTTGC 52149 33 100.0 33 ................................. CTACTCGACGACAGCCAAGACGTTGACAGCATG 52215 33 100.0 34 ................................. GCCTCAGAAGAGGACATGAACGAGCATGGGGCGA 52282 33 100.0 33 ................................. AGACGCTATGAGCGAGGGAATAATCCACCATAA 52348 33 100.0 34 ................................. AAAGTACTCATGGAACCAGTCAAAGCTCATGTCC 52415 33 100.0 35 ................................. GACTAAATACGGTGAAAACATCAACGACCTGGCCA 52483 33 100.0 34 ................................. TCCTCCTGCTTAAGCATCTCTGCTTCTGAAGTAA 52550 33 100.0 35 ................................. TGAAATGCAGTCCGTTCTCCAGCTCTACGTAGAGC 52618 33 100.0 34 ................................. TTCATTGCCAGTAGTTAATACACCATTAGGCAAT 52685 33 100.0 36 ................................. AGGTCGATGAAGCACTTAACGCTAAGGATTTGGCCA 52754 33 100.0 34 ................................. CTTCCGTTGTGCTAACCACTGACGGACCTCTCTG 52821 33 100.0 33 ................................. GGTGATGATAATCTTGTCCAGCTCTATATAGAC 52887 33 100.0 33 ................................. ACCCGTCACGTCCTTGTACTCATCGGTAGTTAA 52953 33 100.0 34 ................................. GAAAAAAGGGCACAAAAAATAGCCCCAAGGCGCT 53020 33 100.0 34 ................................. GATTTTGCTCCCGTCTGAGAGCGTTACAGTATAA 53087 33 100.0 37 ................................. TAAGCATGGTCGCGCTGAACAAGAGGGTCTGGTCCCG 53157 33 100.0 35 ................................. TAAGCCAACTAGGCATCAACAATTTGACCAGCGAC 53225 33 97.0 34 .........T....................... TTCGTAAGTCATTAGATAGCGCCTCCGTCCTGAC 53292 33 100.0 33 ................................. TTGCCTTGATGCCTAGCCTTATGCAGCTCTTAA 53358 33 100.0 38 ................................. TGTATTTTCTTGCTTGATAATTGACTCAAGCCAGTTAG 53429 33 100.0 33 ................................. TGTAGGCTGGGGCGGATCTTGCGCCGTCACTAA 53495 33 100.0 37 ................................. ATTGGTCATAAACGGAGTTAAAACAGATGCCAGTTAT 53565 33 100.0 34 ................................. CCAGAAGACCAGCGCGGCACCTTGCCAGACGGCT 53632 33 100.0 35 ................................. GACTATGCCTCTCAAGTAGTCGGCTCAAACACGAC 53700 33 100.0 33 ................................. CAAACCGTAACGCCATTATCCAGGATCGCATTT 53766 33 100.0 36 ................................. TCTGCCGTTTGATCGTGGACAAGTTAAGACTATCGA 53835 33 100.0 35 ................................. GTCGATTTTGTTCAGCACGCACTCAGTCAAGCTGG 53903 33 100.0 35 ................................. GCTTGTATTAAGTACTGGAACGGGACTAATGCGCG 53971 33 100.0 34 ................................. TTGGCTTGGCTCACTGAAGAGCCAAAGCGTGCAA 54038 33 100.0 38 ................................. GACCTGGAAAGTGAGAAGCTAAAGTAAGATGCTATCAA 54109 33 100.0 33 ................................. GTCTTTCTTTGTTAGCACGTGCAATCTTGTGAT 54175 33 100.0 33 ................................. TATTTGCCAGTACTGGATCTCCTTGTCGGGCTA 54241 33 100.0 37 ................................. GTGACTGGCGAGACATCAACCTTGCAAAAGGATCAAC 54311 33 100.0 35 ................................. AGAAGGCGCTGAAAGATGCTGGAGCATATACTGGC 54379 33 100.0 35 ................................. TCAGAGCTCTCCAATGTTTGGATCGAATGGGAAGT 54447 33 100.0 34 ................................. TCTACGCTAAGGCGGTAAGACGCCCAGTACATCA 54514 33 100.0 33 ................................. TTTACCTCCGCTGCCACTGGTGCATCATCCATA 54580 33 100.0 34 ................................. TTCGCTGGCGTAAGCATCAGCTGGCTTAGACCAG 54647 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 54714 33 100.0 34 ................................. CTCACCGGCTCGGTCGACGGCCTGGAGCGTGAAA 54781 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 54847 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 54914 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ======================================= ================== 54 33 99.5 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTAACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTAACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCGTGGCGCGTTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCTCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCTAGCCTCAAGGCTGCCCGCCTGGCTGAAGCCCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //