Array 1 113152-110987 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXV01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 12TTU13-1-28-1 NODE_4_length_136563_cov_14.6518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113151 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 113090 29 100.0 32 ............................. GGGGCAGCTGAGAACCCGGAGGTTATCCGGTG 113029 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 112968 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 112907 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 112846 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 112785 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 112724 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 112663 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 112602 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 112541 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 112480 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 112419 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 112358 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 112297 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 112236 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 112175 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 112114 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 112053 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 111992 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 111931 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 111870 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 111809 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 111748 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 111687 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 111626 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 111565 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 111504 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 111443 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 111382 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 111321 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 111260 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 111199 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 111138 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 111077 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 111016 29 96.6 0 ............T................ | A [110989] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131345-129914 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXV01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 12TTU13-1-28-1 NODE_4_length_136563_cov_14.6518, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131344 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 131283 29 100.0 6 ............................. GCCGCT Deletion [131249] 131248 29 58.6 0 CC.A.A.G.ATTG.G...........GT. - Deletion [131220] 131219 26 89.7 32 ---.......................... GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 131161 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 131100 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 131039 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 130978 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 130917 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 130856 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 130795 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 130734 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 130673 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 130612 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 130551 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 130490 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 130429 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 130368 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 130307 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 130246 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 130185 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 130124 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 130063 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 130002 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 129941 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.2 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //