Array 1 26142-25334 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATY01000004.1 Providencia alcalifaciens strain NCTC6344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26141 28 100.0 32 ............................ GTAAAGATAATCGCATTGTTACAGTCGGGTTT 26081 28 100.0 32 ............................ ACAATGTTAACTGACGGATCTACTCAGACTTA 26021 28 100.0 32 ............................ GACTAGAAACAGATGTTTTGATATCTCATTGT 25961 28 100.0 32 ............................ TAACTATTTCAACGTTACACCAGGTGAAGGTA 25901 28 100.0 32 ............................ CATATAGTAATTGACTCTCTTAATTTCTCCTG 25841 28 100.0 32 ............................ TCATGATGACGGTAAATCAGAGTCAGCAACGT 25781 28 100.0 32 ............................ TTTGAAATATGTGGAAAGAAATAAATATTACA 25721 28 100.0 32 ............................ AATCATTGCATATACGCTTGAAGAGTTGGGAA 25661 28 100.0 32 ............................ TTGCAACTTCCTCAAGCTCGTTTCCACGCTCC 25601 28 100.0 32 ............................ AAAACACAAGTTGATTAAGCACAGCCGCTAAC 25541 28 100.0 32 ............................ ATTACTCGCCGCTTGGAATTTCCTTGCGAGAG 25481 28 89.3 32 ...........C.T..........A... AGCGATCTATCGATTATGAGTCGAGAGCTACT 25421 28 89.3 32 ..GA......A................. TTTGTGGTTCAACGCTTCATCTTACTAACCTA 25361 28 75.0 0 ..........TCG....T....A.A.T. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 96.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTGAAATCGATTCAAGCGGTTCCCTCTAATGCTCGACCAGTGAGTTATCTTCGTCAGCAAGTCAAAGGCGCTGCACGTATTGAATCTGATATGCAGAAGAAAGCGGCACTTTGGGCTAAAAAATCAGGTCGAACACTGGGTGAATGCTTAGCGGATTTAGAGAAATCTCGCCCAACTAAGCGTAGTTTACTGCCTTTTATTTGGGTAGAAAGCTTGCATGGTAAGAGTGAGAAAAGGGGAAGTCGTCCATTCCCACTTTTTATTCAGTGTGTTGAAGCGGAACACGTCATTGAGGGGCGTTTTAATTGTTATGGGCTTAGCCAAGTCGTTGAACGTAATAAAATACTGACAACAGTCCCTCATTTTTGACCTTTGTTTTTTGCTCTTTAATAACAAGGCGTAAAATCAATAAGTTACAGTAGTCGGTGAAATAAAGGGTATTTTATTAAGAATGCCCTTAACTGATTGTTGTAACTTATTTTTTGTTTGATATTCTCTA # Right flank : TCGGTCTCATCTATTAACTTTTATTATTTATGCCGTTGGGTGATTTGTACTAAATTTGGCGGCTGTTATTCTACAAAATAACAGAATAGTGACTGTTGTAAGATAGCTTAGAAATGAACGATAGAGCGGGTCTAGATTACTGCCATACAGGCAGCTTTACCGAAAAAGACCTGAATAATAGAACGGGTGTAATACTGTGTTATCTGACGACAAACATCATAGACCAACAGATTAATTGGAGAGCGCCATGCAGTACGAAATTATGATTAAGATCCTGTGTATGACCTTAATCTTCAAAGTGACAAAATTATCGGGCTCACTCAAACCCACAAGTTAAATATCAGGGATAACTGCTCAAACGCTTGATGGATCAGGCGTTCTGTATAGCGTGGAAGGATAGAAATAATCAGACCTAACATGCTGATACCAATCGTTAATGTTAGGGGGAAACCGACTACAAACACAGATAGCTGAGGGTCATTCGGTTAAGAATGCCGAGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35296-34848 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATY01000004.1 Providencia alcalifaciens strain NCTC6344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35295 28 100.0 32 ............................ GATAACTGGAACACCGCTAGCGTCTTTAACGT 35235 28 100.0 32 ............................ TACCATCATTCATGTTACCGAAAGATTTAAAC 35175 28 100.0 32 ............................ ATCTTCTGAAAACCCAAAAATAGCGCCTGATT 35115 28 100.0 32 ............................ CAAAAAACCACCGCTATTAATACCTTGATTCC 35055 28 100.0 32 ............................ TTCTAAACAAAGCAGCATCTGGATCTGGTCTT 34995 28 100.0 32 ............................ ATAAGTTGACGCATTGCATCACGATCGCCATT 34935 28 100.0 32 ............................ CAGTGTGTATGGTGCTCGCATTAACTCTGAAC 34875 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : GCGGATACACGCACAATTCAGAACGAAACCCGTAAGACTGAGTTGTTACAGACTAACTGGACTGGTGCAACGACGGATTACTATAAAGAGAAGGCAATGTTCCAAGCTTCTCAAGATATTTTTAAAGATCTCAACAGTATGTCGTTATTTGGCGGACGTTAATTGATTTTTACCGCACCCTTTGGCAGTGGCATGTGTACAGGGTGCGGATTTTTCATTCTTCTCGTTATGTTCGTGCTATTTCTTCCTCGTTATTTTCTCGCCCGGTATATTTCTAAGCACCTTTATCTATAGGTTTATTTCTCTTTCACCATTGCTGAATTTCATTTTGTGCGTATGGTTTATGGTGTCGATTTGATGATGTATTTGACCTTTATTTTTTGTTCTTTAAAAAATCGCCTAATAAACAACAGGTTATTGAACTACCTAAAATAAAGGGTATTTTCAGCCTTTTGGTGCTAACAGTCTGTTGTGATTTGTTTTATTCCTGATAATTTATA # Right flank : TCGATAAGCCACTATTATTTTTCTTAAACTATTAACCATAAGTTTATAGAGGGGAAACTCATCAAGGTAGACATTACAAGGATTGCGAAGTGCCTCGCAAAATGAATCTTCAATTTTTTTAAAGCTTGTAATGTCATTGCTGAGAGACTTAAATGAAATAAATAATTCAAAAAAATTATAGTATTAAGCAAAGGAATATTGACATGGATGACTTTTCCTCATCAGATTTAAAAACTATTTTGCACTCAAAACGTGCCAACATGTATTACCTCGAGCATTGCCGCGTGATGCAAAAAGATGGGCGAGTTCTCTATTTTACGGAAGCGAAAAATGAAAACTTGTATTTCAATATTCCTATTGCGAATACCACCGTTTTACTTTTGGGAACGGGAACTTCGGTCACTCAAGCAGCAATGCGTATGTTATCGCAAGCGGGGGTATTAGTTGGCTTTTGTGGTGGCGGTGGAACACCGCTTTATATGGCAACAGAAATCGAATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //