Array 1 321346-321035 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQB01000025.1 Rhodobacter capsulatus Y262 seq0025, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 321345 37 100.0 32 ..................................... CCTTTCGGCATCGTAGAACCTCTTGTTTAGGT 321276 37 97.3 31 .......G............................. GAAGCCGTTGATTTTCATCGGTCTCTCCTGT 321208 37 97.3 33 ..A.................................. TGATGGTCGCCAGCGGTTTGGTATGCTGGGAGA 321138 37 100.0 30 ..................................... CATGATGTTCCTTTCTTGGGTATGGGGTAA 321071 37 75.7 0 ....................T........GAACCCAA | ========== ====== ====== ====== ===================================== ================================= ================== 5 37 94.1 32 GCCTCACATCACCGCCAAGACGACGGCGGACTGAACC # Left flank : TAGGATCGCTTGACAGATGAGCGGGCAGCTCCTTGCGGTTCTTGCCATCGGTGCTGATCTTGCGTTTGAGCCCCCCCGCCGGATCGCCGAATTCGCTGATCGTCCGCCCTTGAACCTTGCCAATCTGCATTGTCGCGCCCCCAGCACAAAACCCACCAAGGCAAGGATGCAAGCCGTCAAGCCCATTCGCAACAGTTCCGTTGGGCCGGGCCGATTTGCCGCACCATCTGCCCGGTTTTCGACGTTCGGGGCGCGACAAAGCCTGTAGCCATCGCATCGGACTTCGCCTAGGCTTGCCGAAACCCGCCGCCTGCAGCGGCATCGGGTCGGAAATTCGGCAAGGAGGGTTCAGAAAACGCGCAATACACTGACACGGAAAGAGTAATTGCCACTGGAGCGGCGCGGAAATGCAAAAAAGGTCTCAAAATACGGCCTTGATCGTCCAGGGTTCCGAAACCCTGCTTGAAGATCTTGGCGTCTCAATGGCTTGCGGGACCTGA # Right flank : TGCAAACGGAGGTGCGGCAACAGCAAGGTTGCACCGGCTGGACTTCGGCGGCAGTCTGGCGCAACGGGGCGCAGGACACGGAAGATGTGGCGGGGGCAAGATGGACCTGTTTTTCAAGGCCACGGAATATGAGACCCTGCAGGCCTCATGGCTCAAGGTCCAGCAAAACGGCGGCGCGGCGGGGGGTGACGGCGTCACCATCGCCACCTTTGCCCAAGGGGCCACCGCATCTCTGCGCGATCTTGCGCTGGCATTGCGCGCGGGCGGCTGGCAGCAAGGCCCCTGCCGCCGCGTCGACATTCCCAAGCGCAAGGGCGGCACTAGGCGGTTGATGATCCCGCCGATCGCCGACCGCATAATTCATGGGACCGCATAATTCATGGGGCAATCGCCGAAACGCTGGAGCCGATCCTGGATGCGACGTTCGAGATCGGTGAGGGTGTCCGGCCGGGTCGCCAGCAGGCGCTCGAACTCGCTGCGGACCGTCAGCTGGAAGCGCA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCACATCACCGCCAAGACGACGGCGGACTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 28973-29223 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQB01000018.1 Rhodobacter capsulatus Y262 seq0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 28973 37 100.0 33 ..................................... GTCGATCCGGTCTCAAGCTGCGCCTGCGTCACG 29043 37 100.0 35 ..................................... ACGGGGGCGGCGGCGAGGCAGGCGAAGGCGGCGGC 29115 37 94.6 35 .......C.............A............... TGCGTCACCTCCGATCAGCGCGAGGATGCGATCAG 29187 37 83.8 0 .......C..............C.......G..C.TG | ========== ====== ====== ====== ===================================== =================================== ================== 4 37 94.6 35 GCCCAGATACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : TGCACGCGATCGTTCCGGCCCTCCCGGGGCAGACCGATGCGGCGGGGCCGCCCGATGGCTGGCTGCAACTGCTGCAACTCTCGGTGCTGGTGGCGATCATCGCCGGGATCTGGGCTTTGGCCGAGCGGGTCTATTTCCGCGACAAGCGGTCCTTCTGGGGCTGGCTGGCCTATGGTGCGGCGGCGGCGGCCTTTGCGGGCAGCGAGGCGCTGCATCTGTGGCCCGCGCCTTGAGGGGCTGCGGCACCCTGTCTTGCATCCCGGAAACTTCGCGGTGGACAGGGGAAATTTCGCCTGCCAATCTGACCTTGACGGCGGGAAAGCCGGGCCAAAAGGCCGATTCACTGTTGGAAAACCTGCCATGACCTTGAAAATCAAGGATAAAGGAGGAAAAACACGCGCAAAAACCGGGCTTGCAAGGGCTGTTTCGGGGCGTCGGGCACATCACGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTGA # Right flank : GGGGTGTCGGTGTATGGGCCCGCCTGCGTGCGGATGTGGCGTGGTGACGCATCCTTGACGGCTGAAACATCAGGGCTTGCCGGGAATCATTCCTGCCCCTCTCATGTCCCCATTCATGCAGGGGGGCAGGATGTTCCTTTATCTCGAGGGCGTGAATCTTTACGCCACGATTTACGATACCGAAGACCTTTCCACGATCCGCGGCGGCTCGATGGCGCTGGAAACTCTGGCGCAGCGGGCGCAGGCGGCGCTTGGCGGCACGCTGCGCGGGCAAGGCGCCTCGATAGCGCTGTTGGAGTTTTCCGGCCCGCCCCCCGAGGAGGACAAGATCCGCGCCTTTCTGAGCGCCACGCCGCAATGCCATTTCACCCTCACCTGGGGCACGGGCGAGACCGAGGCGCAGGCGATCAAGGCGGCGCGAGACCGGCAGTTTTCGCAGCTTGCCACGGTGGTGCTGCCTGCGATCATGGCGGGGGTGCGCCCCTGTGCGATCGATCACA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGATACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 35721-35896 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQB01000018.1 Rhodobacter capsulatus Y262 seq0018, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 35721 37 100.0 32 ..................................... ACCCAGAACAGGTGTTTGAGCGGCCCACCCGC 35790 37 100.0 33 ..................................... GAATGACAGCAACGTACAGCATCGTTTGCCTTT 35860 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================= ================== 3 37 100.0 33 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : CAGCGCCGCCGCGCGCTGCTCGCTCAGCCGCGCCTCGAAGACCGAATATTGCACCCGCGTCGCGGCCCCTTCCAAAATCCGCGCCACCCGACGCCGCTTGCGGTCTTGCGACACGTCATAGGTGAAGACCATCAGCATCTCGGCGCGCGGCATGGCAGACCCTTTTCGGTGCAGATTTCGGGCCTCAGTCTGCCGCGAAACGGGGGGCTGCGAAAGCCCTTGCCGGGCGGGCGGCCCTGCGGCGGTCTGTCGTGGCGCGGGGCAATCTTGACGGTGGACAGGACGGATTTCGCCTGCCAGTTTGAACTTGAGAGGCGGAAAATCGGGCAAAATCGCCGATTCACCGTTGGAAACCCTGCCATGACCTTGAAGTCACAGGATAAAGGAGGAAAAACACGCAGCAAAACCGGGCTTGCAAGGGCTGTTTCGGAGTGTCGGGCACATCACGGTTGGAAAGCGGACCAGAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : CATGCCCTATTCAACGAGGGCGGCGCCACGGGACGGCAATCCTTGGCGAGTTCAGTAGTCCTGCAGCTGCGGCAGGTAGGGGACCGTTTCCGGGCTGCGGCAGTGGCGGGCGAGCGCGCGGGCCTCTTCGAGCATGATCCGGCGCAGGGCGTGGCGCTGTCCGGTCTGGCTGGAGCGGATCACCCGTTCCAGCGCCTCCTCGTAGCCGGTGATCAGCGCGCGCCGACCGGGGGTGAGGAGGCGCAGGCTGTCGCCCTGCGGCTCGAACATCTCCTCGCGCAGGCGGCGGCGGTTGAAGAGGCTCACCGCCAGCCCCTCGGAGAGGGTGGCGCGGAACACCTCCATCAGGTCATAGACGGCGGCGTCGCCCCGGTCCTGCGCCTGATGCAGCACGCCAAAGCCGGGGTGCAGCCCCGCGCCGATCAGCGCGGCGCGGATGTCGCGGGCCAAAAGCGCGGTCAGGTAATTGATCGCGGCGTTGAGGGGCGTTTTCGCCGGGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 38069-38391 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQB01000018.1 Rhodobacter capsulatus Y262 seq0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 38069 37 100.0 34 ..................................... TCTTCCATCGAGCACTTGCAACCAAACACCCCGT 38140 37 100.0 34 ..................................... CTCCTTTCTCCACCCCGCGGGGTGTGCGCACGTG 38211 37 100.0 37 ..................................... GGGCGTATTCACGGCCCACCAACGCCCCCCATGCGGT 38285 37 100.0 34 ..................................... GGAAGATTTTCGGTCATCTTACGCGATCCGCATA 38356 36 81.1 0 ..................T.CA.......G.C-..C. | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 96.2 35 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : GGTAGCCGTAGCTGTCGGGGGAAAACAGCGGCTCGAGCCGGGGGTCAGCGCGGCGGCGACGGCGGTTTGCACGATCCGGTCGGAGACGGCGGGGATGGCGAGGCGACGGGTGCCGCCGTCGGGCTTGGGGATCTCATGCAGGCGCAGCGGCCGGGGTGCGTAATTTCCGTTGCGCAACAGCCCCGACAGCCGCGCGATCGCCGCCGCCCCCTTGGCGGCAAAGGCTGCGATGCTTTGCCCGTCGCCCCCCGCACATCCGTTGTTGCGCCGCACCTTTTCGAATGCCAAGGTGAGGGCATGGGGGTCGGAAATCTGGCCAAACAGGCCCGAAAATCGGCCTTCGTCGTTGGAAATCATGCCATGCCCCTGCGGGATAAGGGAAAAAGCGAGGTGAGAGACACAGGAAACCAGAAAATCGGGCCCGAGTCGAGGGATGCGGCACGTCACGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : CGAGGGGCGTCAGCCGCACCCTTCCCGCGCCGATGGTGGTGTCGGCGCCGATGTGCAGCGCCTCGGCCAGCGTGAGCAGGCGGCGCAGCTCGGGCGGGGGCGCGGAAAAGGCGATGCGGCCGGAAAAGCCCGGACGCGGTTTCGTGCCCCGCGCCAGCGCCCGCCGTTCGCCCGCAACGGCCGGGGGGGCGGCGCGCAGCGCCTCGGCCAGCTCCGCCTCGGGCAGATCGAGCGCAAAGCCGTGCCACTGCGCGATCCCCTTGGCGCGTTTGGCAAATCCTGTCAGCAGCGAGGCGGGATCGAGGCCCAGCCCCGCGTGATCGGCGCGCAGGCGCTGGATGATCGGGGTTTGCGTGCGCAAAGCCAGCGCCCCCGCAGGCGGGGGGGAAGCCGTCAGTTGCGCATGGGACACGGCGGTGATCTGCATCGGCACCCGGCCCGCGCGGCCCAGATCAAGGCCGCCGCGCAGCCCGGCAATCAGCGCGGCGCGAAACTCGGGC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 74786-79105 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQB01000018.1 Rhodobacter capsulatus Y262 seq0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 74786 32 100.0 37 ................................ TGCACCCGCTGGCCCTGCCGGTGATCGGTGATCAGCG 74855 32 100.0 34 ................................ ATCGCCGCTTTGGCGGTCGACAGGCTGGTAACGT 74921 32 100.0 35 ................................ ATCTCGGTGCCGTCGCTCGTCCAGCCGGCCTGCTC 74988 32 100.0 34 ................................ CACCTTGCGGATTGTCACTTTCGCGGGGCGAAGC 75054 32 100.0 34 ................................ ATCTGCATGTAGTCGGCGGGCAGTTCGAGCCGCA 75120 32 100.0 33 ................................ TGGTATGGATCTGGCGCAAACGGAAAGTCTGTC 75185 32 100.0 36 ................................ CTGCGGCGTGAGTTGCCAGTGATAGACGCCGTGGAC 75253 32 100.0 35 ................................ TGCGCCGCCTATCGCATCCGGTCGAGCGCCGCGCA 75320 32 100.0 34 ................................ GATGCGTTCATGGCCTACGTCGGGCAGTGGACTG 75386 32 100.0 35 ................................ TCGCCCTCGATCCGCGCTTGCCTCACGCCTGCCGC 75453 32 100.0 35 ................................ AGGCGCATCTGATGTATATGCCCGGTGAGACGGCT 75520 32 100.0 36 ................................ TTTTCGTCATCTGGCAGGCTCGCGCCGCCACGCTGC 75588 32 100.0 36 ................................ CCGGCGAAAAACGGCCATGCCTCCGGGTGTCTGGCT 75656 32 100.0 35 ................................ AGCAGGTCAGCCGCGGCCCCGGTGAACTTCTGTTC 75723 32 100.0 36 ................................ AAGCAGTGGGGTGAGTGGGCTGACCAGACAAACGCT 75791 32 100.0 36 ................................ CGCGCCCTGCGGGTGATGGCGACGGGCACCACGGCG 75859 32 100.0 37 ................................ GGACCTGAAATTCCGCGGGAAACGCGGCGGCGAGCAC 75928 32 100.0 34 ................................ TGCTTTCGTGGGACTGGCCAGCCGCCCGCGCCAA 75994 32 100.0 34 ................................ GATTTCGTCGCTTACGACGCCTATCTGATTTCGG 76060 32 100.0 35 ................................ CATGCGGCGATAACTCGCTCTTGCGATCCGTCATC 76127 32 100.0 33 ................................ CCTGTCCCTCATATGCTGCCACGATGCCCTTGA 76192 32 100.0 33 ................................ CGTGTGGATGATCATGCAGCGCGGACGGCTTGG 76257 32 100.0 35 ................................ CGGTCCAGAGATAGACCGCGCGGACCTCCTCAGAC 76324 32 100.0 34 ................................ AGCCTGCGCGGCCGCATCGGCTTCCGCCTGCGTG 76390 32 100.0 33 ................................ ATCAGCTCGTCGTTGGTCAGCCGGACGATGTCC 76455 32 100.0 34 ................................ TGCCGTCTTGAGTGATGGGGCGCGAGCACATGTC 76521 32 100.0 35 ................................ GTCCAGCTCGCGCCACATGTCTTCGACCGTGCGCC 76588 32 100.0 35 ................................ GTGTCTGCCACGACGCCCTGCACCAGATCCGCGCC 76655 32 100.0 35 ................................ ACCGCGCACGCGCGAACGGCGTCAGCCCCGCGAAC 76722 32 96.9 35 .................A.............. GGCTTTACAGCCTTCGCGCCCCACGCCAGACGGAC 76789 32 100.0 34 ................................ TCTTCAATGGATATGGCAAAACCGTCCGCGACAT 76855 32 100.0 34 ................................ ACCGTCATCACCACGCAACCGCCCTGCACCACCG 76921 32 100.0 35 ................................ AACCCGATCATGGCCCGCCTCAGCGCCGCGCTGAC 76988 32 100.0 34 ................................ ATCCGCGGATCGGCGTGACCCGCCCCGCCCATCG 77054 32 100.0 35 ................................ TACAGAGTTCCGGTCTTGTTCTGTTCCGGTAACAG 77121 32 100.0 34 ................................ TTGTCTGACGCGCTCATCAGCACGTCAAGATTCA 77187 32 100.0 36 ................................ TCGGCAAGGACATCGCCGATCTGGGTAAGGCCGGTG 77255 32 100.0 35 ................................ ACCCGGCGCCGCAGCGAGTGCGTCTGGAACAGGAT 77322 32 100.0 34 ................................ TATGCTGGCTCGACCGAGTTCACGGCGGGCTATC 77388 32 100.0 36 ................................ GGGTCGAAGACCTGCTTGACGCGCTGGATCTGCGGC 77456 32 100.0 36 ................................ GCTGCTGACACCGCCAACAAATATGTGGTCAACACT 77524 32 100.0 35 ................................ GCTGGCGCGCGCCGCGCCGGATCTTTGTCTGCGCG 77591 32 100.0 36 ................................ TCGGCCTCGATCCGGTCAGCCTCGTATTGCGCGCTG 77659 32 100.0 35 ................................ TTGATGACCAGATCCGCAATCGGCCGGGCTCGATC 77726 32 100.0 36 ................................ CTATGAGGGCTGGCGGCCCGGTCGTGGATCCCGCCG 77794 32 100.0 35 ................................ ATCAGCTTGACCGCATCGAAGCTGGTCACATCGCC 77861 32 100.0 35 ................................ GGCGTAGATCTCGGTCTGGGTGCGCTCGCGGTTGC 77928 32 100.0 35 ................................ ATGGCTATGGCGGCAGTGTCAGGTTTTCCAGCGGC 77995 32 100.0 35 ................................ CCGCCACGTCTTGGAACAGCGTGCCATTGGCCCCG 78062 32 100.0 34 ................................ AACTGACCCGGCAACGGCCTATGCGCTGGACGTG 78128 32 100.0 33 ................................ TACACCGGGGCTCTGGTCACGGTTTGGGACGGA 78193 32 100.0 35 ................................ AGCTTTCAATGGGGGCGGGCGCCGGGCCAACCTAT 78260 32 96.9 35 .......A........................ TGTGCCGGTTCCCGGAGACGCTGGGGCCCTCGCAC 78327 32 100.0 35 ................................ AATGCGGCGCGGGCCTATGGCTGACGGACCCGCCC 78394 32 100.0 37 ................................ TGCGTGCGCGCCATGAATTCATCGAGCGCCATCGAGC 78463 32 100.0 36 ................................ ACCAATGCCGAAGCCAAGGCCGCAGCAGCGGCTGCG 78531 32 100.0 35 ................................ AAAAAGCCGCCGACAAACGCGGCAACCGGCCCGGC 78598 32 100.0 38 ................................ CCCGCGGCGTCCCGAAGACGGTCTTCTGGTGCCGCTGC 78668 32 100.0 35 ................................ ACCCCGAACCTGTCGGCGGCGAACACCGATACCGC 78735 32 100.0 36 ................................ ATCGATGATCAAATCCGCAATCGGCCGGGCTCGATC 78803 32 100.0 38 ................................ GGTGTCCAGCGTCACATGCAGCGGCGTCGCATCGCCAT 78873 32 100.0 35 ................................ CCGGCACCTCAGCCCCGCCCGCTGTCTCACCAACA 78940 32 100.0 36 ................................ TCTATGGGAGGCTAGGGAGGCTACGCACCTTCAAAA 79008 32 100.0 34 ................................ CGCCGCGCAAAAAGCCCGCCAAGAAGCGGAGCAA 79074 32 93.8 0 ............................T..G | ========== ====== ====== ====== ================================ ====================================== ================== 65 32 99.8 35 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Left flank : TCGACGCCTATCCGCCCTGGTTCTGGAGTTGAGATGCTGGTTCTGGTCACCTACGATGTGAACACGCTCGAAGAGGGCGGCAAGAAGCGGCTGCGCCGGGTGGCGAAAGCCTGCGAGGATTTCGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAGGTGGACCCGGGGCAATGGGTGAAGCTGAAAGCGCGGCTGGAAGCGGTCATCCGGCCGGAGTTTGACAGTCTGAGGTATTATTATCTGGGGTCGAACTGGGAGCGGAACGTTGAACATGTCGGCGCCAAGCCTGCGCTTGACCTGAACGGCCCGTTGATCCTCTGATCTGCGAACCCCAAGGGTGTGGCCGTTTCCCACCCGGTTCGCACCGCGTCAGCTCTTTGAAATTGTGGATGAAGCACCGGAGCACCTTGCGCTGCCGCTCCGGAGGCGCTTGCGACAAGCACCTTCGCACCACCGGAGCAATTTACACCGTCTGGTCAGCGGGTTACGAAACGGCA # Right flank : GCGGTGCATCGGCCCGATAAACCCCGATTTTCGGCCCCTGAGGGGAAAGATTCTTGGCACAATTCCGCGCCCGGGGTCGAATCGGGCGATGATCGGAACGGTGGTGGAGGTGGGCGCGGACCGGCTGAACGCCTGGTTCGGGACCGCTGCCGCGGGTCGCTGATACCGCGCCCAGCTCTCATACGGGGCGATGGCGATGATGCTCCTGCGGACCTGACGGGATGCCGGACCGCCTGCGGCGCTCAGGATGTGACGGAGTTGGGGAGCGAGAACCGGCTACGGTCGGTTCGAGACCAGTGTCGCGGACTGTCGCCACGCGGATGCCGCCCCCCTCGGCCCTCATACGGGACGATGGCGGTGCTGTTCCTGCGGACCGGACGGGGTGTCGGCCTGCCTGCGGGTCGCAAAACGGAATGGAAATGAGCGCGACCGGCGTGCGCCTCGAACGCGAGGCCCTGCGGTGGGCGCGGCGGCGGTCAAATGTGTCGGGGAGCGTGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 115387-115946 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYQB01000018.1 Rhodobacter capsulatus Y262 seq0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 115387 32 100.0 33 ................................ GTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT 115452 32 100.0 34 ................................ ACGGATTGCATGGCGCCGAGGGACAGGCTTTGCA 115518 32 100.0 34 ................................ CGCCCGCGGCGTTTGACCTGGTCGCGGGCAGCTG 115584 32 100.0 35 ................................ GACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTT 115651 32 100.0 34 ................................ ACGGATTGCATGGCGCCGAGGGACAGGCTTTGCA 115717 32 100.0 34 ................................ CGCCCGCGGCGTTTGACCTGGTCGCGGGCAGCTG 115783 32 100.0 35 ................................ GACGCGCTGAAGGAGGGTGATCTCGGTGGCGCCTT 115850 32 100.0 33 ................................ ATGGAAAACCGCGGCTTCACCGCGCGGGATTGG 115915 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 100.0 34 GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Left flank : CAGCGATATCTCGGCGTCGCCGATCCGGATCTGACAGGCGGCCGCGTCAGCGGCGCCTTTCTGCTTCGCTTGGCGCGCCGGTTCCGAAGGGACCATCACCTCGACGAACTGCGGAGACTTGCCCTGCGAAGCAGCCTTTCCCTGCGGCCTCCCCCGGCGCGGCAGCTCGGGCAATTCGGCGCGCGCCCATTTCGCGACTAGGGACTCATTGGCGCCGATCTCCTTGGCGACGGTGACGATCTTGGTGCCGGCCTCGATCTTCTTCACCGCCATCGCCTTGATCTCATCGGGCCAGACTCGACGCCCGTTGTCGGCGGTGATCACCGGGATTCCCCAGACCACCACATCGCCGCCCTCCTTCTCGTCCAACATCTCGACCTCCTTCGAACAGAGAGAGGGCGATCATCGCAAAACCCTTATTTCATTGGAACATGGGGTATATGCACCGCTTACCGTGGATCGAAACAGGCTGCTTTGGGCGGAACACCTGATCCTGCTGG # Right flank : CCGTGATGCGTGCCCGATCCATCGGGTTTCGCGGCCGATGCGGCTCCCGAAGTGATCAAGGCTGGTGCGCGCAAATCCATCGAGCCAATCGGGCGCCCAACGATCCGCCGCGACATGTCCGAAAATCGGACGCTCTGATTGCGAAAACTCGGCTATCCTGTTGCGGTCTTCCAGCTGCCTGCACACTGTGCCGGCCTATGGAACGGGAGATCCATGGACCGGGAGACCGCTATCGACAGCAGATCGGCCATTCGTTCGGGGGAGGAGCAGATGGCACACCGTATCAGAAAGCGCGGCTGGGAGGAGTTCATGGCGGTTGGCCGCGCGTCTCCGGATGTCCGCAGCGAAGTTTTGCAGAGTTGGCAGCGGTCCGCGGGGCGACGGATCGAAAAGCTGAAACAAGCGCCGCTCCTGAGCGAGGAGGACTTGCTGACGCAGAGGGCGCAGGCGCGCCGCCTGCGGTCCGGCGCGCGCGGGGTTCTGAACAGGGCAGGAAGTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //