Array 1 540950-540215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048427.1 Rhizobium daejeonense strain KACC 13094 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================= ================== 540949 29 100.0 32 ............................. GCGCATCTTCGCGTGCTTCACAGCGACGACGA 540888 29 100.0 32 ............................. GCGTGGAGTCGACAGATGCGGGCCATGGGGAT 540827 29 100.0 32 ............................. GCTGATTTCGTCTTCTACGACCGAATTGCGAA 540766 29 100.0 32 ............................. CGCCGGAGAAGCCGGAAGATCCGTTCGCAACC 540705 29 100.0 32 ............................. GGCTGGGAGCGCCGAGTGAAAGAGGTGCGATC 540644 29 100.0 32 ............................. TGCGCAGCGATGGCGGCCGCGCTCGCCCCAAC 540583 29 100.0 32 ............................. ATGGCAACGGCCTGCCATGGTCCGCCCTTAAA 540522 29 100.0 32 ............................. CGCACCTCGTAGACCTGACCGCTATACGGCTC 540461 29 100.0 189 ............................. CCGCAGCGGCCAAAGAACCAAGGGCTGCCCATGTGTTTCCCGCATGCACGGGAAGTGTCGTATGCAAAATGGAGGATGATACCGGCAGGAGCGCCAGGACAGACACCGCTCCTGTAAAACCTTGGGGTGACAAACTAGCCGAAGGACCGGCAACGGTGGAATATCCATTTAAGGAAGAGACGTCGAGGT 540243 29 72.4 0 A...........C.T.....A.G.CC..C | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================= ================== 10 29 97.2 50 GTGTTCCCCGCATACGCGGGGATGAACCG # Left flank : CCAAGGCGGGGCAGGGTTCGCTGCGCGCGCTTGCCGGCTGCTTCGGCTTTTCCGGCGACGATATCGAAAAGCGCTGCCGCGTGCTCTCGGGCGGCGAGAAGGCGCGGCTGGTGATGGCGATCATGCTGTTCGATCCGCCGAACCTGCTGGTTCTCGACGAGCCGACCAACCACCTCGATCTCGACACCAAGGAAATGCTGATCAAGGCGCTTGCCGACTACGAGGGCACCATGCTCTTCGTCAGCCACGACCGGCATTTTCTCGGCGCGCTGTCGAACCGCGTTCTGGAACTCTCCAACGAGGGCGTTCACCGCTATGACGGCGGTTATACCGAATATGTCGCCCGCACCGGCCACGAGGCACCGGGCGTCGGAGGCTGAGTTTTCCGGGCCGTGACCGGGTGTCGTCATGGCCTGAAAATACCGCTTTTCCGGGCTCAAAAAATCGGTAGACTTTGGCGCGAAGGAATTCGTGAATGATTTCACTGGCTTCCAGGAAGG # Right flank : TTTCAACCGGGGTAGACGCAAAGCCTGCCTTTCCTGTTATGTCTTGCGACGGGAGATAACAGGAGGACTGCATTCATGAGGGTCAGGGCCGCCATTTTAAGGCAATCGCCGGTCAAGCCGCCGTTTTCGGTGTCGCGGCCGCTTTCCATCGAGACGGTGGAGCTTGCGGGACCGGGGCCGGAGGAACTGCTGGTGCGGATCGGGGCGGCAGGGCTCTGCCACTCCGATCTTTCGGTCATCAACGGCGACCGGCCGCGGCCGACGCCGATGGTGCTCGGGCATGAGGCGGCGGGAACGGTGGAGGCGGTCGGAAGTGGGGTGCACGACATCCGGCCGGGCGACCGGGTGGTGACGACCTTCCTGCCATCCTGCGGGCATTGTCTGCCTTGCGCGGAAGGGCGTTCGGCGCTCTGCATTCCCGGCGCCGAGGCGAATGGCAAGGGGGAATTGCTCGGCGGCGGCTCGCGGCTTTCCTGCGAGGAGGTGCCGCTTTACCATCA # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.75, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 547995-547783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048427.1 Rhizobium daejeonense strain KACC 13094 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 547994 29 100.0 32 ............................. TCGGCAATCGCTGCCTCGTTCTCCGTCTCCAA 547933 29 100.0 32 ............................. CGACGTTCGCCGAGTTCATCGAGGATCACATC 547872 29 100.0 32 ............................. CTTTTCGCAGACCGTTCTGGAGCCGAGCGTGG 547811 29 86.2 0 ......................G..G.GT | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GTGTTCCCCACACGCGTGGGGATGAACCG # Left flank : GGCCGGAGGCGCCGGAGGATGCCGTTGGCCCCGCCTTCGAGGACCCTGCTCCCTCCGGAGACGAGGGGCAGCGCGGATGATGGTCGTCGTCACCAACAATGCTCCACCGCGCCTGCGCGGCCGGCTCGCCGTCTGGCTGCTGGAGGTCAGGGCCGGCGTCTATATCGGGGTCTATTCTGCCCGGACAAGGGAAATGATCCGCGGGCAGGTGGAGAGCCTGATCGAAGACGGCGACGTCGTGATCGCCTGGGCGGCTCCGACCGATGCCGGGTTCGACTTCGAGACCTTCGGCCGCAACCGCCGCGAACCGGTCGATTTCGACGGCCTGAAACTCGTCGCCTTCAAGCCTCTGGAAAATTGATCGAGCGACGTTTCATTCATTGTCCGGCGCATTTTTCAGTCGTTCCGAAGGCCGGAAAAATCAGCTGGTTTTCGTTGAAAAAATCGGTAGGATTTGCGGAGGTGGAATTTTCCTTATATTTCATCGGCTTCTGGGAAGA # Right flank : TTGTCTTCCCGTCCCTCTTGGCCTATTCTGACGGTGGTGACGCGCGGAGCAGGAAGCACGCCCTTCAAGGCGATCGGGATCAGGCGATTCCGGCCCCCCCGGTGCGTTACAACCCATTCAGCAACCTTGCGGTTCTTCCCAGCTTGTTATCGTGCCGATAGCGGCTCTTGCTGCCAGTTTCCCATTCAAAGCTCGTGAATACGCACTCCGGGCACGACGTCGCGGGCGATGTCGCAGAGATGGCGGTGGTGGGTGAGGTAGATCACCTGACCAAGCCCGGCCATCTGGCCGAACAGTCGGAAGACTTCCTCGGAGCGGGGCTCGTCGAAGGTTTCCATGATATCGTCGGCGACGAAGGGGATGGTTGCGGTGGGGCGGACGGCTGCGAATTCCTCGTAACCGGCGAAACGTAGCGCCAGATAGAGCTGGTAGCGGGTGCCGGTCGACATGGCGTCGGAGAGTTTCGAAGCACCATCCTTGGCCACGCCGATCAGGATTTC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 556568-556172 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048427.1 Rhizobium daejeonense strain KACC 13094 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 556567 29 100.0 32 ............................. AGGCTGAGGCTGTCTTTGATACCTATCTGGCC 556506 29 100.0 32 ............................. TGCGGGAGTATGTGGCTACCTCAGATGCCCGC 556445 29 100.0 32 ............................. GCGTTTATCGCAAAGGGTCCGAGACTGACGAA 556384 29 100.0 32 ............................. TGGCACGTCGGCGGTTTCGAAGTCGTGCGTGT 556323 29 100.0 32 ............................. ATTGATGCCCTCCCCGCGAACATGACGACGAA 556262 29 100.0 33 ............................. AAATTGCTGCGGCGAACCGGTTCAACGAGCTGC 556200 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : ACCGTTCGTCTCGCTCGGCGCTCCGGCGGCTTGCTGGTGCCGGCGGTCAGGCGTGATGGAGCGGGTGTGGGGCTCGACTGGGCGCTGAGCGAGCTTTCCGTCCGGAAGCGCTGGCTGCTTGCCGGGGCCGCGATACTCGATGGTGGCGGCCTGCCGGCTCCGCGCGATCCGGCGGCACGAGACGCGGCGCGCGGCCTCTGGCCTGAATGGGAACGGACGATCGCTCTTTATGAAGTCGATTCGGACGGATCTCTTGCGACCGCACAGGACATGGGCCTTTTCTACGATGGCGTCGGCGGTTTGCGAAGGCAGTCTGTGTCCGGGGCGTGAACTCGACGAGGGGGCGCCGTTCAGGGCTCATTTCAGCAGCCTTCGTAGGCCAAAACCTCCACTTTTTTCCGCCTGCCCATGCCCGTCTAAAGGGCCCGAAAAACGATCCCAAAATCGGTACTTGTCAAATCGTCTGGATTTCCTAATAATTTCAGCGGCTTTCAGGAAGA # Right flank : CAACAGCGCCGCCTTGCAGGGCGGCGCGTCTAGTGTTCCCCACACGTGCGGAGTGCCCGCGGCATGGGGATTGTGTCATTCCCGAAATTGTCTTATTTATACTTCAATAATAATAGGAATATCAAAACATGAACCAGAGCGAGGCCCTTGCCGTTTTTGCAGCTCTTTCCCAGGAGACGCGGCTGAGGATCGTGCGCACGCTCGTCGTTGCCGGACCCGTAGGGATGGCTGCAGGGGCGCTGGCGGAACAGGTTGAGGTTTCACCATCCAACATGTCCTTCCATCTGAAGGAACTGGAGCGGGCGGGTCTCGTTACGCAGCAACGCGATTCGCGCTCGATCATTTATCGCGCAAGTGGCGAGAGACTCGGCGATCTCCTTCGTTTCCTGATGGAGGATTGCTGCGGCGGCAGGGCAGAGATATGCGCCCCGGCGTTTGCCATGGCGCAATGCTGTGGGCCGGTAAAGGGCGGCGTGAAATGACCTTCGATCTTCCACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //