Array 1 88283-91551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBB010000002.1 Streptococcus uberis strain GCPRG122 Contig_2_186.934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 88283 36 100.0 30 .................................... ATTTCTACCATCTCACCATTTCTCATAACT 88349 36 100.0 30 .................................... TCGCTATCAGTTGAGCCAATTTCACCACGA 88415 36 100.0 30 .................................... ACGCTATAATAACAGTTTCTAAAGTCATTT 88481 36 100.0 30 .................................... TATTTATCAAGCACGTATCACAGACGAGTT 88547 36 100.0 30 .................................... TTTGTATTCCATGAATCTTCCCCATAGATA 88613 36 100.0 30 .................................... TGCTTGCGAAAGCATAATAAACATAGCTAT 88679 36 100.0 30 .................................... AAGTGACAAAAGAAAATATTGAGGAGTTAG 88745 36 100.0 30 .................................... ATGCTCCTGTAATTGCTTCAGTGATTAGCT 88811 36 100.0 30 .................................... TCAACTTTGCTCCTCTGCGTTCTTGTGGCA 88877 36 100.0 30 .................................... GCTTCTTGATAGATTTTTGCTAATCGTTTG 88943 36 100.0 30 .................................... TTTTGACCATTTCTTTGCAGTTGCTAGCAT 89009 36 100.0 30 .................................... CTGAGCTGACATCCATTTCAACTTTGTCAG 89075 36 100.0 30 .................................... TTTAAATGGCAAATATGAATAATTGCTGTT 89141 36 100.0 30 .................................... AAGCGTGAAAATGGTTGCTTACCAGTATCT 89207 36 100.0 30 .................................... AAGAACAAACTAGATTATAATAAAGATAGG 89273 36 100.0 29 .................................... TTATCTCTTCCTGATAACTTCATGCTATC 89338 36 100.0 31 .................................... ATACTACCAAAAAGACTATAAGTATGCCTAT 89405 36 100.0 30 .................................... TCCGAACATCACCGTTGACGATTCAATAGA 89471 36 100.0 30 .................................... AAGCAAGCGATAATTCCAAATAGATTTATC 89537 36 100.0 30 .................................... AATGATGGAGCTTGCGCTTGTGCAGGTGCC 89603 36 100.0 30 .................................... GGTGAGAAATCTCATACGCTCTCAATTCAA 89669 36 100.0 30 .................................... ATAGTAACCCAGACAACCCAAACCACTGGC 89735 36 100.0 30 .................................... TTTATCTTCTTCAACATGCTTGGTTGATTA 89801 36 100.0 30 .................................... TTTCTCAATTGCTACTGTGTTGTCTGGCAT 89867 36 100.0 30 .................................... ATGATTTAAAAATTGCATTAAGAATAATTA 89933 36 100.0 30 .................................... CTTTGACACAGTATGAATTATCTGCGATGA 89999 36 100.0 30 .................................... TGATTAAGTACATCATTAGAGGCGAGAGAG 90065 36 100.0 30 .................................... AAATCCACTGTATAACGTAATCAGGCCTAT 90131 36 100.0 30 .................................... TTTTGATTTAATGATCATCGATGAGGCGCA 90197 36 100.0 30 .................................... TGAATTACTTTGGTTAGTGAATCAAGTAAA 90263 36 100.0 30 .................................... TCTATAAGTGGCTGGAAAGCATGGGTAATG 90329 36 100.0 30 .................................... GATGATCTAATCGCAAATAAAATTTCTCTT 90395 36 100.0 30 .................................... ATTTCTGTGCTTTCGACATCTATTTGACCG 90461 36 100.0 30 .................................... AACACGCATTTGATTAATATCAAGACCAGC 90527 36 100.0 30 .................................... TCTTTCCTTCTTTAGTTTTTCTATTGCTCG 90593 36 100.0 30 .................................... ACAGGGACATTTGTACCATATAGATCTATT 90659 36 100.0 30 .................................... TTTCTAAAAAGAACAAGAATAAGAAAAATA 90725 36 100.0 30 .................................... CAGAAAAGAAGATGGAGAACCCCAATTTAA 90791 36 100.0 30 .................................... CAGAGGGACGGAAAGCCGGTCAACAATTAC 90857 36 100.0 30 .................................... TACACAGTAACAGTTTATAAAAATAAAGTA 90923 36 100.0 30 .................................... ATGCAACTTGAAATCGATAAGCTTAAAGCG 90989 36 100.0 30 .................................... AACAAATGAAACGATTAATGCAATTGCTCA 91055 36 100.0 30 .................................... CTCTGTTCATAAGACCCCTCAATTTATGGT 91121 36 100.0 30 .................................... AAAAACGATTGAATGGCACAAAGACGAGGA 91187 36 100.0 30 .................................... AGTTGAGTACAGGTTTAAGCTCTGGTTTCA 91253 36 100.0 29 .................................... ATCGAACACTAATAAATACTAACTAACAA 91318 36 100.0 30 .................................... ATAGATTTGCTAAGTTAAATAAGGTACTGA 91384 36 100.0 30 .................................... ATCGGAAACAATTGTGCATCTCTGACTTGG 91450 36 100.0 30 .................................... ACATTACCTAAGCCAGCGAATCCACCTCTT 91516 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== =============================== ================== 50 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : TAGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGAGTTTATCCAATCTATTGTTTAAAATGTATAATTATTAATAAAATAGCTTTAAAAATGTATATCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAAGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //