Array 1 433605-434730 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIMR01000019.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44702 N44702_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433605 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433666 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433727 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433788 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433849 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433910 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433971 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 434032 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 434093 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 434154 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434215 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434276 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434337 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434398 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434459 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434520 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434581 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434642 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434703 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450989-452408 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIMR01000019.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44702 N44702_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 450989 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 451050 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 451111 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 451172 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 451239 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 451300 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451361 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451422 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451483 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451544 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451605 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451666 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451727 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451788 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451849 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451910 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451971 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 452032 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 452093 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 452154 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [452196] 452196 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 452257 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452318 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452379 29 96.6 0 A............................ | A [452405] ========== ====== ====== ====== ============================= ====================================== ================== 24 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //