Array 1 13393-12145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMSZ010000098.1 Escherichia coli strain KCJ2K2384 NODE_98_length_13429_cov_26.375207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13392 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 13331 29 100.0 32 ............................. TCGAAAAACTTCGTCCTGAAAAAATTCATCAT 13270 29 100.0 32 ............................. GCAGTAAATTATTTGACCTCGTTGATAATCCC 13209 29 100.0 32 ............................. CCGGTGCAACTGATATTGATAAACGTCGACTC 13148 29 100.0 32 ............................. ACACCCGACCGCTAACCGATTTCGTTACAGTA 13087 29 100.0 32 ............................. TGTATCACCGAAAGAATGGTTTGACGCGCAGG 13026 29 100.0 32 ............................. ACGTCTATCATTTTCAGTACAAGCTGGGTTTT 12965 29 100.0 32 ............................. GACGATCCCGAGATTCACAGAGTTACAACTAA 12904 29 100.0 32 ............................. GAAATTTTCACATGGATTGTAGCCCTGTATAT 12843 29 100.0 32 ............................. GCCAGGCGGTCGGATTAGGTGCAAATCAAAAT 12782 29 100.0 32 ............................. TCGGGCGGCTCTGGTGTTCCTGACATGGCGGC 12721 29 100.0 32 ............................. AATTTGCATCACATAGGGGCGAGGCTCAGTGA 12660 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 12599 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 12538 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 12478 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 12417 29 100.0 32 ............................. CTTCTCCACCGTTTGGCGAATCGGTGTGAGGG 12356 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 12295 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 12234 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 12173 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGCCAGCCGTTCAGTATTGCCGGTGTCAGCAAA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 614-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHMSZ010000014.1 Escherichia coli strain KCJ2K2384 NODE_14_length_82622_cov_27.762252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 613 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 552 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 491 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 430 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 369 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 308 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 247 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //